rs242149109 SNP Detail

Summary

• ID
  rs242149109
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:74850880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT TTTCCACGTT TTCAGTGTTT
  S
  TCGCCATATT CCAGGTTCTA CAATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ	FVB/NJ	SWR/J
ss921420881	MGP_WTSI_12_74804106	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ	FVB/NJ	SWR/J
rs242149109					SNP	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921420881	MGP_WTSI_12_74804106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:74850880 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4766	CpG island 4766	within coordinates
Tssr113890	transcription start site region 113890	231 bp downstream
Tssr113891	transcription start site region 113891	31 bp upstream
Tssr113892	transcription start site region 113892	114 bp upstream
Tssr113893	transcription start site region 113893	164 bp upstream
Tssr113894	transcription start site region 113894	217 bp upstream
Tssr113895	transcription start site region 113895	275 bp upstream
Tssr116673	transcription start site region 116673	135 bp upstream