rs242154549 SNP Detail

Summary

• ID
  rs242154549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCCACA GCCCAGAGGG
  TCATCAGTGC TTAAAAGCGA CACTTAACGC AAGGGTTCTC TCTTGGAGCA GGTCATTTTG
  AGGATGAAAT GGGAGCGGAA ATACATTGGC AGTACTTATA GTCAGGGGTG AGGAGTACAA
  GGCAAGATTC TGTTGTGTGT GTGGGATAGC GGGCGTGTTC AGTTTGATAA GCGAGCCCTG
  R
  AGGGAAAGGT GGTATATGAA GTGATTTACA TCTGTAAATA TCTGAACCTT GGCGTGTTTA
  TGAATAAAGG CGATTCCAGT TAGTAAATTT ACAGAGGCTA TCGTGTTTAT CATTTGGAGA
  CTAATTCTGT AGTGTTTTGT ATAGCCATGT CTGAGCACGT TAGACATGGC TAATAGGAAT
  TCACAGTGCC ATATACACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321616899	CHEV_5_96639542	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242154549					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	112 bp distal
Gm72185	predicted gene, 72185	455 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	271 bp downstream
Rr614892	regulatory region 614892	1612 bp distal
Rr614893	regulatory region 614893	1020 bp distal
Rr614894	regulatory region 614894	482 bp distal
Rr614895	regulatory region 614895	369 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	1035 bp downstream
Tssr47396	transcription start site region 47396	760 bp downstream
Tssr47397	transcription start site region 47397	362 bp downstream
Tssr51962	transcription start site region 51962	497 bp upstream