rs242157209 SNP Detail

Summary

• ID
  rs242157209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32488807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC ATGAAGCACA TTGCACACTG
  K
  CAGGGCAGGG CTATGCAAAG CTGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321778415	CHEV_6_32461872	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242157209					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32488807 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	within coordinates
Plxna4os1	plexin A4, opposite strand 1	within coordinates
Rr628119	regulatory region 628119	789 bp distal
Rr628120	regulatory region 628120	473 bp distal
Rr628121	regulatory region 628121	178 bp proximal
Tssr55474	transcription start site region 55474	702 bp downstream
Tssr55475	transcription start site region 55475	682 bp downstream