rs242158520 SNP Detail

Summary

• ID
  rs242158520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:115090177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTCCTC TTCTCAGCTC
  TGCCTCCTGG CTGAGGATGA AGGCCTGAGG GGACCCTGAC CAAGAAGCTC TGTTGCTTCT
  ATCACCCACG TGCTCTCAGG TGATCAGGAG TTCCTGGGTG TGCAAGGGGT CCTGTGGTTT
  GGAGAGTCCT CTGGTGCCCT AGATGCCCTC AGCTGGGTTC ATGCAGAAGA TGGCCAGACT
  R
  GCCCCAACCT GAATGGATCC CAGCCTCTGG TCTGGCAAAG TTCTCTTGTC TCTGTTCTTG
  CTTTCACAAG ACCCTCCGAG ATTCTTTGAC ACTGGTGTTG CTTTCCACTC ACCTGTGCTA
  ATGAGGTGAT CCCGAGGTCC TGCAGCATGG AGAGCACTCT GGATCCCTTA GTAGCCCCTG
  CTGGGCTCAG AAGGAAGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
ss387453559	MGP_WTSI_12_116364768	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	SWR/J
rs242158520					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387453559	MGP_WTSI_12_116364768	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:115090177 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Rr387812	regulatory region 387812	1160 bp upstream