rs242158579 SNP Detail

Summary

• ID
  rs242158579
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116242560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTAATGA ACACATTTAG ATGGGTGGAT
  AAAGTAGTCA GGGGTTTGGA AGCTTGCcct tgcacatgtt aggtgagcat cctacgactg
  agctacatcg ccagtccTAT GTCCTATctg ttgatcattt ggcatcaata attcttcatt
  R
  tgtatgtggg agggggctgt cctgcatacc gtagggtggc tagtgccatc cccgacgtac
  agccatcata tcacctcttt gcaactgaaa caaaacatcc tcagacattg cagagggtct
  cAGACCAGCA GGAGCAGTCC ATTTTGAGAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895037	CHEV_3_116151829	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242158579					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116242560 () rs orientation: forward

Symbol	Name	Function Class
Gm22361	predicted gene, 22361	347 bp upstream
Gm66091	predicted gene, 66091	within coordinates