rs242169517 SNP Detail

Summary

• ID
  rs242169517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42203988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTGTC TTCAGCAAAT
  ATTGAGTTAA AAATTTCTCT CTGGCACTTA ACTTTTTTTT CTTCTCTTTC TGTTTCAAGT
  AACAAAAACT CGACTTCTGA AGACTTTTTG TTTTTAATCT TAACACATTA TCTATGTCTG
  CATGTTTATC TTTTGGTTCA AACAGCTCGG CTGGGGGAGG GGAACTACAT TATATGTTTT
  R
  TGAATCCTAC CCATTGGGTA TTTCATTTAA TAAAATAGAA GACATCTTAC TGGAATATTA
  AAATGGTACT CTTTCATTGT AAGGCTGACA TAGTATTACC CACCACCCGA GCTTTCTAGC
  TGCATAATCT TTGCTCCTAT GACCAAATTT ACTTTTTGGT AGGCATATTT TCTTCCTCTG
  CAAAACATTA TTTTTGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388403598	MGP_WTSI_13_42145881	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242169517					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388403598	MGP_WTSI_13_42145881	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42203988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5502	CpG island 5502	689 bp distal
Cpgi5503	CpG island 5503	718 bp proximal
Gm28707	predicted gene 28707	within coordinates
Gm61288	predicted gene, 61288	within coordinates
Gm61314	predicted gene, 61314	201 bp downstream
Hivep1	human immunodeficiency virus type I enhancer binding protein 1	1316 bp upstream
Rr281297	regulatory region 281297	within coordinates
Rr403731	regulatory region 403731	896 bp upstream
Tssr119424	transcription start site region 119424	1143 bp downstream
Tssr119425	transcription start site region 119425	906 bp downstream
Tssr119426	transcription start site region 119426	772 bp upstream
Tssr119427	transcription start site region 119427	1236 bp upstream
Tssr119428	transcription start site region 119428	1330 bp upstream
Tssr119429	transcription start site region 119429	1484 bp upstream
Tssr119430	transcription start site region 119430	1503 bp upstream
Tssr119431	transcription start site region 119431	1600 bp upstream
Tssr119432	transcription start site region 119432	1804 bp upstream