rs242170711 SNP Detail

Summary

• ID
  rs242170711
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:16237826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCGGCGGC GGTTCCTCTC
  GGGTTACGGT GAAGAATGTC AGCCACTAGC GTGGATCAGG TGAGGGAGCA GGGCCCCGGC
  TCGGCGAAGG CCGGAGCTGC AGAGCTCCAC CCTCGCGTGC GGCGCGGCTC CTCTAGCCGC
  CGCTAGCTCC GTAACGGCGC CGCGGGTCCC GGTTGTCGGG GCTGCTGCCC AGGCCGGCCT
  S
  AGCGCGGGCG GCTGAGTCTG CGGCCGGCGC CCGTGACCAC AGGCCCGGAG GTCCCGGCGG
  CCGCCGCGGG GCCCGGAGCT GGCGGGTGCC GGAGGCGAGG CGGAGAGGCG GCGGGAGGCG
  GCCGGGCGGA GAGGTTGCGG AGGATCTGGT GGGGTTCACA CCTACGCGGA TTGTTCTGAA
  GAACTTGTTT GCAGTGGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357084033	MGP_WTSI_3_16083662	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242170711					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357084033	MGP_WTSI_3_16083662	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16237826 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12993	CpG island 12993			within coordinates
Gm64384	predicted gene, 64384			within coordinates
Rr397612	regulatory region 397612			377 bp downstream
Rr573790	regulatory region 573790			416 bp distal
Rr573791	regulatory region 573791			within coordinates
Rr573792	regulatory region 573792			46 bp proximal
Tssr833	transcription start site region 833			44 bp upstream
Tssr28473	transcription start site region 28473			456 bp downstream
Tssr28474	transcription start site region 28474			382 bp downstream
Tssr28475	transcription start site region 28475			354 bp downstream
Tssr28476	transcription start site region 28476			202 bp upstream
Tssr32661	transcription start site region 32661			within coordinates
Tssr32662	transcription start site region 32662			171 bp downstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3			Intron
				Noncoding-Transcript-Variant