rs242172578 SNP Detail

Summary

• ID
  rs242172578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81015104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCCTCA GATTGACCCC
  GTCCTGGGCA CCGTAGGCTT TGGTTCTGGC CTGCATGGCT GGGCCTTCAC CCTGAAGCAG
  TTTGCGGAGA TGTATGTGGC CAAGTTTGCA GCCAAGGGTG AGGGCCAGCT GAGCGCAGCC
  GAGCGTGCCA AGAAAGTAGA GGACATGATG AAGAAGCTGT GGGGAGACCG GTGAGTACAT
  R
  GCTGTGTGAC TGTCTCTACC CCTGCTACTT GTGGACAATG CCTGCCTGCC GATACTATGT
  GACTGCTCTC TACAGGTACT TTGATCCGGC CAATGGCAAG TTCAGTAAGT CAGCCAATAG
  CCCAGATGGG AAAAAACTTC CCCGCACCTT CTGCCAGCTC ATCCTGGACC CCATCTTCAA
  GGTGGGTAAG CTGTGGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381032056	MGP_WTSI_10_80642015	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242172578					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381032056	MGP_WTSI_10_80642015	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81015104 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	1094 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435544	regulatory region 435544	1711 bp distal
Rr435545	regulatory region 435545	405 bp proximal
Rr435546	regulatory region 435546	897 bp proximal
Snord37	small nucleolar RNA, C/D box 37	257 bp downstream
Tssr94696	transcription start site region 94696	1533 bp downstream
Tssr94697	transcription start site region 94697	1433 bp downstream
Tssr94698	transcription start site region 94698	1182 bp downstream
Tssr94699	transcription start site region 94699	65 bp downstream
Tssr94700	transcription start site region 94700	64 bp upstream
Tssr94701	transcription start site region 94701	124 bp upstream
Tssr94702	transcription start site region 94702	301 bp upstream
Tssr94703	transcription start site region 94703	364 bp upstream
Tssr94704	transcription start site region 94704	383 bp upstream
Tssr94705	transcription start site region 94705	411 bp upstream
Tssr94706	transcription start site region 94706	603 bp upstream
Tssr94707	transcription start site region 94707	653 bp upstream
Tssr94708	transcription start site region 94708	718 bp upstream
Tssr94709	transcription start site region 94709	972 bp upstream
Tssr98570	transcription start site region 98570	108 bp downstream
Tssr98571	transcription start site region 98571	476 bp downstream