rs242175655 SNP Detail

Summary

• ID
  rs242175655
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAAAAGT GAGGAAATGA
  GGTATTTTAA AGGTAGAAGA TGATACTTGG AAATATATTT GTACTTAATA TTGTTTTAAA
  ATTGCACATA TGATATTAAG GGCAGCAGAC ATTTTATGAC CATGCACTGT GTGTCTAGCA
  TAATCCTAGG TGCAGGGTCA TGGTAGGTGT GGAGTTGGAT GCATCCTTGT CCCTCCTGGA
  A
  CTCTCCGGCA TACATAATGC CATGCAGTTG GGCAAGGTGA TAAAATATTC TTCTTTTAGC
  CGGGCATGGT GGTGCACACC TTAAATCCCA GCACTTGGGA GGCAGAGGCA GGCAGATCTC
  TGAGTTTGAG GCCAGCCTGG TCTACAGAGT GAGTTCCAGG ACAGCCAGGG CTACACAGAG
  AAACCCTGTC TCGTAAAACT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323830642	CHEV_11_99915317	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242175655					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944829 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1888 bp downstream
Tssr104895	transcription start site region 104895	1738 bp downstream
Tssr104896	transcription start site region 104896	1711 bp downstream