rs242177645 SNP Detail

Summary

• ID
  rs242177645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31081101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGTGGC TGTCACCCTA
  GACAGGTGGT CTTGGGGTGC ATAAGAAAGC AAACTGAGCT CTTGCCTCTT GCTTGCCTCT
  CATTCCCTTG TGCCCCCTCT CTGCCTATTC CCTTTCCCCC TCTTTCCACA TGGGTCATGG
  CCAGCTTCCA CTTATCCACT CTCTCCTCTC TGCCTTTCTC TGCCTCCTCT ATTCTCTTAA
  Y
  TCCCCTCCCC ACGCCCTAAA TAAACTCTAT TCTATATTAA GAGAGAGAGG AGGAGAGAGG
  AGGGGAGGGG AGGGGAGGGG AGGGGAGGGG AGGGGAGGGG AGGGGAGGGG AGGAGAAAGT
  AAACTGAGCA AGCCAGTAGG CAGCACTCCT TCAAGGTCTT TCAGTCCTAC CTCCAGGTCC
  TGCCCTCCTT CATGAAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889496	CHEV_9_30977390	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242177645					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31081101 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Rr675959	regulatory region 675959	1119 bp distal
Tssr88636	transcription start site region 88636	997 bp upstream
Tssr88637	transcription start site region 88637	963 bp upstream
Tssr88638	transcription start site region 88638	886 bp upstream
Tssr88639	transcription start site region 88639	715 bp downstream
Tssr88640	transcription start site region 88640	726 bp downstream
Tssr88641	transcription start site region 88641	738 bp downstream
Tssr88642	transcription start site region 88642	763 bp downstream
Tssr88643	transcription start site region 88643	802 bp downstream