rs242180867 SNP Detail

Summary

• ID
  rs242180867
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30112819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTTTAC CTCTCTGTAA
  AATGGGAGAA AGGCATCAAC CCCTGGTGAA TACTATGAGG ACTCAGTGAC GTCACACATG
  GGAGCACTGT CGTGAGTGCT CCTGCTGGTG GCTCTGTCCT CCACAGCCTG TGACCATGAT
  GGGAGGGTAG ATATAGAATA ATAACCACGG CTGATACTTA CAAGGCTAAT GTGGGTTGGA
  Y
  CCTGCTCTAG TAATGCTGGT TGGCTGAGAC CCCACGACCC TGCAAAGAAA GTACGATTTA
  ATTCTCAGTC TTGTGGATGA AGAAATCAAG GCCCAGAGAA GCTAAGCGAC TTGGAAAAGG
  TTGCCCAGCT AGGAAGAGGC TGAGCTGATT TCAATGACTA GCACCCACAG TCCCTCCTGT
  TCCAAGATTT GCCCTCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906655	MGP_WTSI_7_31198413	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242180867					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906655	MGP_WTSI_7_31198413	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30112819 () rs orientation: forward

Symbol	Name	Function Class
Gm32029	predicted gene, 32029	within coordinates
Rr155980	regulatory region 155980	1582 bp proximal
Rr167464	regulatory region 167464	within coordinates
Rr167465	regulatory region 167465	1581 bp proximal
Tssr65702	transcription start site region 65702	445 bp downstream
Tssr65703	transcription start site region 65703	350 bp upstream
Tssr65704	transcription start site region 65704	946 bp upstream
Tssr65705	transcription start site region 65705	1098 bp upstream
Tssr71736	transcription start site region 71736	25 bp downstream
Tssr71737	transcription start site region 71737	290 bp downstream
Tyrobp	TYRO protein tyrosine kinase binding protein	388 bp upstream