rs242183375 SNP Detail

Summary

• ID
  rs242183375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117727088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCT GCACTCTACA TGGCCCACCC
  Y
  GTGTCTGTCT TGGTGTACCT GTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280635	CHEV_4_117542496	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242183375					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117727088 () rs orientation: forward

Symbol	Name	Function Class
Ccdc24	coiled-coil domain containing 24	within coordinates
Cpgi14669	CpG island 14669	1694 bp distal
Gm17114	predicted gene 17114	1333 bp upstream
Rr598242	regulatory region 598242	1842 bp distal
Rr598243	regulatory region 598243	425 bp proximal
Slc6a9	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	586 bp downstream
Tssr42995	transcription start site region 42995	1409 bp downstream
Tssr42996	transcription start site region 42996	1433 bp downstream