rs242185210 SNP Detail

Summary

• ID
  rs242185210
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104425514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGAAGA GGGGAGAAAA
  GGGAAACCAA ACCATTGCTT GGAACTTTAA AAAAATACAC TGAATATAAT TTTCAATTTA
  CTCTCTTGTG TTCAGAATTT TTGTACTATT TTTTCTTTCT TTTTCATTTC TTTTCTTAAG
  ATTATTTTGA TTAGACTGAA CTATTTAGTG GTGAATTTGG AGCCCTTAAA ATTCATGACA
  R
  GGAAAGAAAG GCAATGTAAA ACTTAAAGGC GTCTTAGAAA ATTAATTTTG AAGATGATTA
  TTTTCCCCAA AGCAGCAGTG CAGCCTTGTT TATATTAACC TGATGCTTAC ATGTGAATAG
  TAGTGATGTT TTTGGAGTGT GCTACATTAA AGCAAATCAT TCATTTATCA CAACTGGCAG
  CAAATTTTTC TGTGTAGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514943	CHEV_13_105079086	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242185210					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104425514 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	within coordinates
Gm60746	predicted gene, 60746	1791 bp upstream
Gm60750	predicted gene, 60750	1653 bp downstream
Rr369763	regulatory region 369763	1833 bp downstream
Tssr120915	transcription start site region 120915	1944 bp downstream
Tssr120916	transcription start site region 120916	1899 bp downstream
Tssr120917	transcription start site region 120917	1874 bp downstream
Tssr120918	transcription start site region 120918	1859 bp downstream
Tssr120919	transcription start site region 120919	1627 bp downstream
Tssr120920	transcription start site region 120920	1540 bp downstream
Tssr120921	transcription start site region 120921	1508 bp downstream
Tssr120922	transcription start site region 120922	1482 bp downstream
Tssr120923	transcription start site region 120923	1124 bp downstream
Tssr120924	transcription start site region 120924	1083 bp downstream
Tssr120925	transcription start site region 120925	1044 bp downstream