rs242189238 SNP Detail

Summary

• ID
  rs242189238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72426077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGAAGA CTTGAGTTCG
  GTTCCCAGCA CCGATGTCCG GTGGTTCACA ACCACCTTTA ACTATGCCTT CAGGGAATAT
  CATGCTCTCT TCTGATCTTC TTGGGTACCC CTCTTCCCCA AACACACATG TGGTGCACAC
  ATACACACAC ATACATGTAA ATAAAAATAA AATTTAAAAT ACTGTATTTT GTATTCTTTA
  Y
  TAATTTTTTT CTAATTAATC TAACTTAGTG ACTTTCACTA TATTCAAGTA GGCAACTTCT
  ACATCACCTT TAAACTGTTT GTATAATATT GAGGAATGGA TTGAAGTAAG ATCTCATCTA
  GTCTCATCTA GCTAATAAGG GTTGCATTTT AAGGAATTTT GAGACTGAGA TGAAATGTAA
  GGATTTTGAA AAATAAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320343236	CHEV_2_72433790	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242189238					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72426077 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	1936 bp proximal
Tssr18356	transcription start site region 18356	1812 bp upstream