rs242194812 SNP Detail

Summary

• ID
  rs242194812
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153426013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCCTGCC CATTGCCTTG
  TAGGAAAAGG GAGAAGTGAG AAGATTTTAA GAGTGGATTA CAGGCCACAG GTGGTTGTGC
  GCTCCTTTAA TCCCAGCACT TGGGAGGCAG AGACAGGAGG ATTTCTGGGT TCAAGGCCAG
  CCTGGTCTAC AGAGTGAGTT CAGGACAGCC AGGGCTATAC AGAAAAACCA AAACCAAAAA
  M
  CAAAACAAAA CAAACAAACA AAAAACAAAA GAAAAAAGAA GCTGGGCAGT GGTGGCGCAC
  ACCTTTAATC CCAGCACTCG GGAGGTGGAG GCAGAGGCAG GTGGATTTCT GAGTTCGAGG
  CCAGCCTGGT CTACAGAGTG AGTTCCAGGA CAGCCAGGCT ACACAGAGAA ACCATGTCTA
  GGGAAAAAAA AAAAAAAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975360	MGP_WTSI_1_155397397	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242194812					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975360	MGP_WTSI_1_155397397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153426013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	406 bp distal
F630010C12Rik	RIKEN cDNA F630010C12 gene	556 bp upstream
Npl	N-acetylneuraminate pyruvate lyase	553 bp upstream
Rr420697	regulatory region 420697	233 bp distal
Rr420698	regulatory region 420698	35 bp distal
Rr420699	regulatory region 420699	624 bp proximal
Rr420700	regulatory region 420700	710 bp proximal
Tssr14276	transcription start site region 14276	543 bp upstream
Tssr14277	transcription start site region 14277	522 bp upstream
Tssr14278	transcription start site region 14278	439 bp upstream
Tssr14279	transcription start site region 14279	412 bp upstream
Tssr14280	transcription start site region 14280	186 bp upstream