rs242196017 SNP Detail

Summary

• ID
  rs242196017
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6971613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCCTTCT CACAGGAGTT
  GCCTGAGACC ACGAGAAAAC ACAGATATTT ACATTATGAT GTGTAACAGT AGCAAAATGA
  CAGTTATGAA GTAGCAATGA AAATCACAGT CGGGGTCACC GCCACACGAG GGACTGTATT
  AAAGGGTCAC AGCATTAGGA AGACTGAGAA CCGCTGTGCT CGGCAAACAG TCTAACAAAG
  K
  GAGTGTATCC CCAATCCTCA ATGGCTGTGA CCCTCGAATG TTTGTCTTGT CGGTCAAGTG
  CCCCATAATA CAGAATACAG GTTCTGGGCA TGTTCATTTT ACAGATGAGA AATGGAACAG
  ATATCCAGGG AAGTCCTTGT ACCCAAGTGA GGCTGACTCA GTAACACACT CTCATTACTT
  TTTGGCAAAC ACAGACAGTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401684180	MGP_WTSI_19_7068735	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242196017					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401684180	MGP_WTSI_19_7068735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6971613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10540	CpG island 10540	1357 bp distal
Cpgi10541	CpG island 10541	1770 bp proximal
Dnajc4	DnaJ heat shock protein family (Hsp40) member C4	1673 bp upstream
Gm59273	predicted gene, 59273	1199 bp downstream
Nudt22	nudix hydrolase 22	within coordinates
Rr405836	regulatory region 405836	1368 bp downstream
Rr543529	regulatory region 543529	1670 bp distal
Rr543530	regulatory region 543530	1737 bp distal
Rr543531	regulatory region 543531	1782 bp proximal
Trpt1	tRNA phosphotransferase 1	1886 bp upstream
Tssr154719	transcription start site region 154719	1869 bp upstream
Tssr154720	transcription start site region 154720	1898 bp upstream
Tssr154721	transcription start site region 154721	1967 bp upstream
Tssr157917	transcription start site region 157917	1721 bp upstream
Tssr157918	transcription start site region 157918	1651 bp upstream
Tssr157919	transcription start site region 157919	1780 bp downstream