rs242198094 SNP Detail

Summary

• ID
  rs242198094
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32420318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGACATTG GAAAGGAGCC
  CGCTCACCGG CAGGACCCGA AGGACTGCAG AAGTCCCCGG GATACCTTCA AGAGAGGCGC
  TGGGATGGAT TGCAGCCCTA GCTTGTTCTG CCGGCTTGTA CCTTCTGCAT GTGAATACTT
  GTATAGTGGC TAGGGGTTTC TCCTTGGATA ACATGACACG AATTTTCCAT ATTACCGGCA
  R
  AGTATGGTTT CGCAGCATCA AGTACTTTCA CATTGTGTGT GGTTATTGTG TAAACCATAA
  ACTAAAATGC CAAGATCTAA ATATGGTGAG CCTCAACTCA GCCTAATAGA CTGCCTATTT
  ACACGGGAAT GCAAGGCTAT GACTGGAGCA TGCGCCAACA ACCAGGTACG GGCGGGCTTC
  GCGAATTCGA GGACTGTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357463391	MGP_WTSI_3_32265091	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242198094					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357463391	MGP_WTSI_3_32265091	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32420318 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	within coordinates
Rr374783	regulatory region 374783	233 bp downstream
Rr574945	regulatory region 574945	1671 bp distal
Rr574946	regulatory region 574946	502 bp distal
Rr574947	regulatory region 574947	680 bp distal
Rr574948	regulatory region 574948	1 bp distal
Rr574949	regulatory region 574949	479 bp distal
Tssr28742	transcription start site region 28742	1765 bp downstream
Tssr28743	transcription start site region 28743	1241 bp downstream
Tssr28744	transcription start site region 28744	843 bp downstream
Tssr28745	transcription start site region 28745	816 bp downstream
Tssr32923	transcription start site region 32923	1014 bp upstream
Tssr32924	transcription start site region 32924	951 bp upstream
Tssr32925	transcription start site region 32925	743 bp upstream
Tssr32926	transcription start site region 32926	547 bp upstream
Tssr32927	transcription start site region 32927	478 bp upstream
Tssr32928	transcription start site region 32928	256 bp upstream
Zmat3	zinc finger matrin type 3	504 bp upstream