rs242228564 SNP Detail

Summary

• ID
  rs242228564
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25113584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTTAT CTGGCAGCAG
  CTGAGTTCAG GTTTCTTGTG TTAAGAAATT CGACTTAGGC ATCCTTCAGT TTTTTTCGCC
  TCCTGTGCTA CCTCGCTAGC CAGAGGAAAA GTGAAACATG GATTAGGACT GGCACTGGGC
  TGGTCATAGG GAGACACTCA CATTGCTGGG GGCCGGGTCG GGCCTGACAA CGTTCCACTG
  M
  AGGCTGCGGG CCTGGTGCTG CGGTTCGATG CGGCATTCAC AGCCTAGCGT GCCCAGCGCC
  TCCATCAGGA TGTCAGAGCC TGCATCTTCC AGGACAGCTG GATCCCAGCA GGCACATTGA
  GTTATTCCAC CATCTCCAGT GCGGACTAGT GGGTGACAAC GCTACCCTGT CTGGTGGCTG
  GCCCCAGATT CCCAGCCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397865723	MGP_WTSI_17_25031555	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242228564					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397865723	MGP_WTSI_17_25031555	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25113584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	within coordinates
Mrps34	mitochondrial ribosomal protein S34	510 bp upstream
Nme3	NME/NM23 nucleoside diphosphate kinase 3	1890 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	507 bp upstream
Tssr143114	transcription start site region 143114	909 bp upstream
Tssr143115	transcription start site region 143115	1878 bp upstream
Tssr143116	transcription start site region 143116	1925 bp upstream
Tssr143117	transcription start site region 143117	1999 bp upstream
Tssr146794	transcription start site region 146794	437 bp downstream
Tssr146795	transcription start site region 146795	850 bp downstream