rs242233825 SNP Detail

Summary

• ID
  rs242233825
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113367047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGG GCAGTACCAG ACCCAGCGAC
  W
  GCACTTCCCA GAAAGTGGCT TCTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322424339	CHEV_7_120911324	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242233825					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113367047 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	787 bp distal
Rr653859	regulatory region 653859	1626 bp distal
Rr653860	regulatory region 653860	within coordinates
Rr653861	regulatory region 653861	842 bp proximal
Rr653862	regulatory region 653862	1465 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68626	transcription start site region 68626	1963 bp downstream
Tssr68627	transcription start site region 68627	1899 bp downstream
Tssr68628	transcription start site region 68628	1771 bp downstream
Tssr68629	transcription start site region 68629	1747 bp downstream
Tssr68630	transcription start site region 68630	1712 bp downstream
Tssr68631	transcription start site region 68631	1611 bp downstream
Tssr68632	transcription start site region 68632	1555 bp downstream