rs242240387 SNP Detail

Summary

• ID
  rs242240387
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC CTAGCCTCAG TACGCGTCAT
  A
  CCCAGGGTTC TACGCAGTCT AGCGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605477	CHEV_2_164159552	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242240387					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175736 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	482 bp downstream
Tssr745	transcription start site region 745	439 bp downstream
Tssr746	transcription start site region 746	432 bp downstream
Tssr747	transcription start site region 747	419 bp upstream
Tssr748	transcription start site region 748	394 bp downstream
Tssr749	transcription start site region 749	357 bp downstream
Tssr750	transcription start site region 750	340 bp downstream
Tssr751	transcription start site region 751	288 bp downstream
Tssr752	transcription start site region 752	226 bp downstream
Tssr753	transcription start site region 753	216 bp downstream
Tssr754	transcription start site region 754	448 bp upstream
Tssr21562	transcription start site region 21562	1080 bp downstream
Tssr21563	transcription start site region 21563	1071 bp downstream
Tssr21564	transcription start site region 21564	1040 bp downstream
Tssr21565	transcription start site region 21565	1027 bp downstream
Tssr21566	transcription start site region 21566	1016 bp downstream
Tssr21567	transcription start site region 21567	1004 bp downstream
Tssr21568	transcription start site region 21568	995 bp downstream
Tssr21569	transcription start site region 21569	490 bp downstream
Tssr21570	transcription start site region 21570	448 bp downstream
Tssr21571	transcription start site region 21571	420 bp downstream
Tssr21572	transcription start site region 21572	406 bp downstream
Tssr21573	transcription start site region 21573	375 bp downstream
Tssr21574	transcription start site region 21574	313 bp downstream
Tssr21575	transcription start site region 21575	460 bp upstream
Tssr21576	transcription start site region 21576	476 bp upstream
Tssr21577	transcription start site region 21577	495 bp upstream
Tssr27433	transcription start site region 27433	460 bp upstream
Tssr27434	transcription start site region 27434	430 bp upstream
Tssr27435	transcription start site region 27435	405 bp upstream
Tssr27436	transcription start site region 27436	388 bp upstream
Tssr27437	transcription start site region 27437	347 bp upstream
Tssr27438	transcription start site region 27438	330 bp upstream
Tssr27439	transcription start site region 27439	325 bp upstream
Tssr27440	transcription start site region 27440	309 bp upstream
Tssr27441	transcription start site region 27441	260 bp upstream
Tssr27442	transcription start site region 27442	250 bp upstream
Tssr27443	transcription start site region 27443	191 bp upstream
Tssr27444	transcription start site region 27444	180 bp upstream
Tssr27445	transcription start site region 27445	433 bp downstream
Tssr27446	transcription start site region 27446	477 bp downstream
Tssr27447	transcription start site region 27447	572 bp downstream
Tssr27448	transcription start site region 27448	1186 bp downstream