rs242242113 SNP Detail

Summary

• ID
  rs242242113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43088875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCCTAAG GATGGTGGCA
  AATTGGGCGA TAACTGTGAG CAGGGAGAAG TGTCCCCAAT GTGAGACAGG TCTCTCTCCA
  GTGACCTGGA GGTGAAATTG GAAGGCTGGA GAACAGCTAC GAAGGGACAA GGCTTGGGGT
  CAGAGGCACA AAGCAAGCAA GGAAAGCACT TGAGACTCTG GTCTGACAGA GACGGCAGAG
  Y
  CATCACAGGT TTGATGGAAG CCCATGATCT TGGAGGCCAT GTGGTTGAGT GGCCATGGAG
  GAGAGCCAAA AGCAGGTGAG GTTCCTATCT GGGGACCAGA TGAGGAACCT GGGACCAAAA
  GTGGCATTTT GGTTGCTTTC TCAGATGGCA GAGTCTCTGT CCTTCAGGAG AGGAAGGCTT
  TCCTGGAGAG AAGCAAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196977	CHEV_7_50694821	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242242113					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43088875 () rs orientation: forward

Symbol	Name	Function Class
Cldnd2	claudin domain containing 2	1331 bp upstream
Nkg7	natural killer cell group 7 sequence	1205 bp downstream
Tssr66001	transcription start site region 66001	1855 bp downstream
Tssr66002	transcription start site region 66002	1827 bp downstream
Tssr66003	transcription start site region 66003	1370 bp upstream
Tssr66004	transcription start site region 66004	1394 bp upstream