rs242244397 SNP Detail

Summary

• ID
  rs242244397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCTCTT CCAGAAGGTA
  ATATCCAGAT GTTAACCAGA GCATAATAAC ACATATGGTG ACCAGGGAGT GTATCCTAGT
  TACTGCTTCT ACTTGCGAGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTATGTGTGT
  GTGTTAGGAC ATCATTATTT AATATTAGAT TTTTTTTCTC TTGCTGCTCA GAAGTGACTG
  R
  ATCGCTAATG TTTGTTCAGA AACGTTGAGT TCACTTGCTT CAGTGACCAC TCTTTGAAGT
  TTCTAGGGCT CATTTGATCA GGTCTGGAGT GCGTACGCTT CCTTTCCCAC TTTTTCTCAT
  GTTATTTTTG GCACTGCTGG TGTTGGAAGC TGGGGAAGTG ATTCACTGCA AAGTGAATTA
  ATTTTCCACG TTTTCTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369337447	MGP_WTSI_6_97778893	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242244397					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369337447	MGP_WTSI_6_97778893	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805860 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	36 bp proximal
Tssr1945	transcription start site region 1945	1583 bp downstream
Tssr57866	transcription start site region 57866	1930 bp downstream
Tssr57867	transcription start site region 57867	1657 bp downstream
Tssr57868	transcription start site region 57868	1635 bp downstream
Tssr57869	transcription start site region 57869	1597 bp downstream
Tssr57870	transcription start site region 57870	1438 bp downstream
Tssr57871	transcription start site region 57871	1420 bp downstream
Tssr57872	transcription start site region 57872	650 bp downstream
Tssr57873	transcription start site region 57873	604 bp downstream
Tssr57874	transcription start site region 57874	587 bp downstream
Tssr57875	transcription start site region 57875	567 bp downstream
Tssr57876	transcription start site region 57876	537 bp downstream
Tssr57877	transcription start site region 57877	361 bp upstream
Tssr57878	transcription start site region 57878	405 bp upstream
Tssr57879	transcription start site region 57879	421 bp upstream
Tssr57880	transcription start site region 57880	474 bp upstream
Tssr57881	transcription start site region 57881	674 bp upstream
Tssr57882	transcription start site region 57882	772 bp upstream