rs242249359 SNP Detail

Summary

• ID
  rs242249359
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120883088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG CAGCCCTGCA GAAGCACGTG
  R
  AGCTGACATG TCTTCTAGTC TCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323870971	CHEV_11_120853576	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242249359					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120883088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4335	CpG island 4335	485 bp distal
Csnk1d	casein kinase 1, delta	932 bp upstream
Gm53204	predicted gene, 53204	within coordinates
Gm57327	predicted gene, 57327	within coordinates
Rr403207	regulatory region 403207	762 bp downstream
Rr461864	regulatory region 461864	1181 bp distal
Rr461865	regulatory region 461865	1334 bp distal
Rr461866	regulatory region 461866	1182 bp distal
Rr461867	regulatory region 461867	1077 bp distal
Rr461868	regulatory region 461868	943 bp distal
Rr461869	regulatory region 461869	828 bp distal
Rr461870	regulatory region 461870	within coordinates
Rr461871	regulatory region 461871	346 bp proximal
Rr461872	regulatory region 461872	534 bp proximal
Tssr106388	transcription start site region 106388	1687 bp downstream
Tssr106389	transcription start site region 106389	867 bp downstream
Tssr106390	transcription start site region 106390	823 bp downstream
Tssr112430	transcription start site region 112430	1225 bp upstream
Tssr112431	transcription start site region 112431	1188 bp upstream
Tssr112432	transcription start site region 112432	1167 bp upstream
Tssr112433	transcription start site region 112433	1156 bp upstream
Tssr112434	transcription start site region 112434	984 bp upstream
Tssr112435	transcription start site region 112435	923 bp upstream