rs242253159 SNP Detail

Summary

• ID
  rs242253159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:94536029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCTTTTC CCCCTTGCAA
  ATATATTTTT ATGCTGAGTG ACATTTCCAA AATAGGATTT TCTCTCCATT GCTGAAATGA
  AGCAAACAAG TTTACTTTCA GAGTCACAGA AATGCCCAAC TGTTACGAAA AAAGAAAGTG
  TTTTCCACTG GCCCCTTGCC TGTCTTTATC CTGGGCAGTC TTGCCTGTTG GCTCCTCCAT
  Y
  TAGGAAGGCC CCTGGGGCTG ACTGGTGGAA CTGATTGTAA AACTATTTTG TGCAGTAAGA
  ATTAATGTCT TCAGGCTCTG AGACCACCCA GAACATGACC GATCTTTGGC AACTGTCTAC
  TGTTTTCCCC AGTGCTGGGT TCGCTGTTTG CTGAATAACT GACCCTGGTT TCTGACTATC
  TGAGAAGATA TGAAGGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375627884	MGP_WTSI_8_96333301	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242253159					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375627884	MGP_WTSI_8_96333301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:94536029 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20831	CpG island 20831	359 bp proximal
Gnao1	guanine nucleotide binding protein, alpha O	1184 bp upstream
Tssr78791	transcription start site region 78791	1064 bp upstream
Tssr78792	transcription start site region 78792	1151 bp upstream
Tssr78793	transcription start site region 78793	1171 bp upstream
Tssr78794	transcription start site region 78794	1370 bp upstream
Tssr78795	transcription start site region 78795	1389 bp upstream
Tssr78796	transcription start site region 78796	1406 bp upstream
Tssr78797	transcription start site region 78797	1418 bp upstream
Tssr78798	transcription start site region 78798	1431 bp upstream
Tssr78799	transcription start site region 78799	1487 bp upstream
Tssr78800	transcription start site region 78800	1529 bp upstream
Tssr78801	transcription start site region 78801	1589 bp upstream
Tssr78802	transcription start site region 78802	1682 bp upstream
Tssr78803	transcription start site region 78803	1882 bp upstream
Tssr78804	transcription start site region 78804	1921 bp upstream
Tssr82468	transcription start site region 82468	824 bp downstream