rs242264180 SNP Detail

Summary

• ID
  rs242264180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTAATTA TTTTGATTGC
  TGGAATAAAG CATGTGGAAA TGACCCAATG CATGTGCAGT GGCCTCTGAA TTTCCTTCCT
  GGGACGTGGG GAGGTGGGGA TCCAGGGACA GGGCTCTGGG ATGGGGGACT TGCCTTCTAC
  CCCTGCCCTT TCTCTCTCCC TCACTTCTCA TCCAGATATT GCCACCTTCC TCTCTTGCCT
  K
  TCTTATGCCT TAGACCTTTT TTCTTGCCTC TTTTACCTTT TCCTCTTTCC AGTCTTCCTT
  GTGCATCCCC AGATCCCCAG CTTCACCAGT TCAATCATCC CAGGTGCACA GCATTGCGGA
  CATGCTCGCA CGTACTTCAT TCCCAGATCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCACACA CACACACACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384336288	MGP_WTSI_11_94814509	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242264180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384336288	MGP_WTSI_11_94814509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844021 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	153 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	123 bp proximal
Gm74287	predicted gene, 74287	1056 bp downstream
Rr454892	regulatory region 454892	629 bp distal
Rr454893	regulatory region 454893	1985 bp proximal
Tssr3647	transcription start site region 3647	1211 bp downstream
Tssr104279	transcription start site region 104279	1967 bp downstream
Tssr104280	transcription start site region 104280	1955 bp downstream
Tssr104281	transcription start site region 104281	1941 bp downstream
Tssr104282	transcription start site region 104282	1871 bp downstream
Tssr104283	transcription start site region 104283	1718 bp downstream
Tssr104284	transcription start site region 104284	1658 bp downstream
Tssr104285	transcription start site region 104285	1628 bp downstream
Tssr104286	transcription start site region 104286	1595 bp downstream
Tssr104287	transcription start site region 104287	1571 bp downstream
Tssr104288	transcription start site region 104288	1531 bp downstream
Tssr104289	transcription start site region 104289	1523 bp downstream
Tssr104290	transcription start site region 104290	1475 bp downstream
Tssr104291	transcription start site region 104291	1460 bp downstream
Tssr104292	transcription start site region 104292	1363 bp downstream
Tssr104293	transcription start site region 104293	1256 bp downstream
Tssr104294	transcription start site region 104294	1222 bp downstream
Tssr104295	transcription start site region 104295	1178 bp downstream
Tssr104296	transcription start site region 104296	1154 bp downstream
Tssr104297	transcription start site region 104297	1131 bp downstream
Tssr104298	transcription start site region 104298	1097 bp downstream
Tssr104299	transcription start site region 104299	1063 bp downstream
Tssr104300	transcription start site region 104300	1043 bp downstream
Tssr104301	transcription start site region 104301	923 bp downstream
Tssr104302	transcription start site region 104302	909 bp downstream
Tssr104303	transcription start site region 104303	890 bp downstream
Tssr104304	transcription start site region 104304	848 bp downstream
Tssr104305	transcription start site region 104305	826 bp downstream
Tssr104306	transcription start site region 104306	811 bp downstream
Tssr104307	transcription start site region 104307	794 bp downstream
Tssr104308	transcription start site region 104308	721 bp downstream
Tssr104309	transcription start site region 104309	697 bp downstream
Tssr104310	transcription start site region 104310	611 bp downstream
Tssr104311	transcription start site region 104311	562 bp downstream
Tssr104312	transcription start site region 104312	493 bp downstream
Tssr104313	transcription start site region 104313	477 bp downstream
Tssr104314	transcription start site region 104314	72 bp downstream
Tssr110223	transcription start site region 110223	1938 bp upstream
Tssr110224	transcription start site region 110224	1874 bp upstream
Tssr110225	transcription start site region 110225	1658 bp upstream
Tssr110226	transcription start site region 110226	1618 bp upstream
Tssr110227	transcription start site region 110227	1605 bp upstream
Tssr110228	transcription start site region 110228	1545 bp upstream
Tssr110229	transcription start site region 110229	1525 bp upstream
Tssr110230	transcription start site region 110230	1488 bp upstream