rs242277618 SNP Detail

Summary

• ID
  rs242277618
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:115633037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCCTCCGGA GTAAGGCACA ACTCTCCGAG AGAGGCAGGC
  ATCCTGAGGA ACAGGGTGTC CACAGCAAGG GAGCGGCGCC GGGCCCCTTT CTCTACCTCG
  R
  CTCGCCCGCT TGCCTGCCCG CCGGCGAGCA CCCTCCTCCC AGTCCCCTCC CGGCCAGCCG
  CGGCTCTGCC AAAGGCTGCG CTCGACTGCC TCGCGTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322438439	CHEV_7_123177316	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242277618					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:115633037 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19603	CpG island 19603	1278 bp distal
Cpgi19604	CpG island 19604	within coordinates
Rr654128	regulatory region 654128	1970 bp distal
Rr654129	regulatory region 654129	683 bp distal
Sox6	SRY (sex determining region Y)-box 6	within coordinates
Sox6os	SRY (sex determining region Y)-box 6, opposite strand	1252 bp downstream
Tssr68686	transcription start site region 68686	1870 bp downstream
Tssr68687	transcription start site region 68687	1793 bp downstream
Tssr74379	transcription start site region 74379	178 bp upstream
Tssr74380	transcription start site region 74380	9 bp downstream
Tssr74381	transcription start site region 74381	61 bp downstream
Tssr74382	transcription start site region 74382	507 bp downstream
Tssr74383	transcription start site region 74383	588 bp downstream
Tssr74384	transcription start site region 74384	661 bp downstream
Tssr74385	transcription start site region 74385	795 bp downstream