rs242282142 SNP Detail

Summary

• ID
  rs242282142
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4524651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCACGA CCCACTCGAG
  TGCATACCCA TTCGGGTCAG ACATTCTTCA ACCAGAACGC GGAGTCCACT GGAAGCCACG
  CTCCTCGGTC CCATCTACCA ATCTTTGTCT CCGACTAGAG CTACGCACTG CCTATCTATT
  CACTGCTAAC CACTACGCTC ACGCCTAAAC CTTGCTGTAG GCAAGTTCCC CCCAACCACA
  K
  GCCGCTGTCA CCAAGCCCAA CCTGAACCTT TCTGAAATTC TGCCCCACCC ATAGGGCTCT
  GCCCATCACC CTACCACCCC TTTCCAGGGC CTTGGTCCTG CCCCCTTCTG GGTCTCAGAG
  GATTCTTGAA CCCAGAAGCC CATCCTCTTG GACCCCGCCC CACCTTGGCG TGTGGCTCGG
  TGGCATAGGC TCGGTAGTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370565880	MGP_WTSI_7_4473254	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242282142					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370565880	MGP_WTSI_7_4473254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4524651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	within coordinates
Dnaaf3	dynein, axonemal assembly factor 3	1281 bp downstream
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	1170 bp downstream
Tssr64336	transcription start site region 64336	18 bp upstream
Tssr64337	transcription start site region 64337	161 bp upstream
Tssr70484	transcription start site region 70484	224 bp downstream
Tssr70485	transcription start site region 70485	775 bp downstream
Tssr70486	transcription start site region 70486	1147 bp downstream
Tssr70487	transcription start site region 70487	1164 bp downstream