rs242286877 SNP Detail

Summary

• ID
  rs242286877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:107266292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTTAGTG GGGAATGGAG
  GTCACACAGA CCCAGGAAAT AAACATTGGA TTACAAGGTT GCAGTAAGGA AGGCTCAGGA
  GAGCTGTCGG TGATTGAAGC AGAGGGTCAG GAGCCCTCTT TGAGGAAATG GCACTTCACA
  GAAACCTAAA AGAGCAATAG TATGGAGTCA GGTGGAAAAT GGCATGAGAA GCATTTCTGG
  Y
  CAATGCAAAA GTGGGTGGCG CTGTGCAAAA GTCCCAAGGC AAGAGAGTCT GGAGGGTTTC
  AACACAGAGA AAACCATTGT TGCTGGATTC AGTCGTGGTA GGTAGAGGCA GGGGAATGCC
  AGATTACACA GAATAGCCAG TGATGGCCAC GTAGAGGCCA TGGGTGACTG ACAGGGTTTG
  TAATGAGGAG GCAACATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322380449	CHEV_7_114810599	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242286877					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107266292 () rs orientation: forward

Symbol	Name	Function Class
Ppfibp2	PTPRF interacting protein, binding protein 2 (liprin beta 2)	Intron
Rr652907	regulatory region 652907	1517 bp proximal
Tssr2361	transcription start site region 2361	1704 bp downstream
Tssr68436	transcription start site region 68436	1479 bp downstream
Tssr68437	transcription start site region 68437	1365 bp downstream
Tssr68438	transcription start site region 68438	1215 bp downstream
Tssr68439	transcription start site region 68439	881 bp downstream