rs242289024 SNP Detail

Summary

• ID
  rs242289024
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:100750150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCAGGT TTTCCCCACC
  TCTAAAGTTG AAAAAAAAAA AAAAAAGAGT AAAAGAGGAG GTCCAAAGAC CAGAAAGAAG
  GATCAGGAAC TCGGAATGGA AAGAAAAGAT ACAAGAAGAA ATTAGTAAGA GAGGAAGCCA
  ATTAAAATGA TCCCTCCAGG CCACTGGGTC TTGGCCCGGA TGGTATTCGA GTAGGCAGCC
  D
  GGCTGGCCCC TCCTTTGGTA CTGCCCATGC CAACTTCCAG GCAGAGAGGA GGCCCAGAGG
  AGAGGGAAGC TGGGCAAAGG GGATGGCAGA CTTCCAGCCT GGCCTTGTCC AACCCCTGGG
  CCTTGAGGGG AACTCTTCGG GATGGGGACT ATGATCCAGG CAAAGCTCCA GGGAGCAGGT
  CTGCTGCCCG GCAAAGTCTG                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384467500	MGP_WTSI_11_100720638	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242289024					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384467500	MGP_WTSI_11_100720638	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:100750150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3835	CpG island 3835	869 bp proximal
Gm72578	predicted gene, 72578	within coordinates
Rr456792	regulatory region 456792	within coordinates
Rr456793	regulatory region 456793	670 bp proximal
Rr456794	regulatory region 456794	805 bp proximal
Rr456795	regulatory region 456795	1202 bp proximal
Stat5a	signal transducer and activator of transcription 5A	27 bp upstream
Tssr104969	transcription start site region 104969	129 bp upstream
Tssr104970	transcription start site region 104970	168 bp upstream
Tssr104971	transcription start site region 104971	545 bp upstream
Tssr104972	transcription start site region 104972	787 bp upstream
Tssr104973	transcription start site region 104973	854 bp upstream
Tssr104974	transcription start site region 104974	946 bp upstream
Tssr104975	transcription start site region 104975	968 bp upstream
Tssr104976	transcription start site region 104976	1002 bp upstream
Tssr104977	transcription start site region 104977	1025 bp upstream
Tssr104978	transcription start site region 104978	1094 bp upstream
Tssr104979	transcription start site region 104979	1123 bp upstream
Tssr104980	transcription start site region 104980	1323 bp upstream