rs242296029 SNP Detail

Summary

• ID
  rs242296029
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:41397510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACAAAAT CTATTGAGAT
  TGGCTTGTTT CTGTTCGAGT TGAATTTTTT CAAGCTTACG CGCTTTATTA AAACTTGTTT
  CTCTGGTGTT TGGAGGCAGT GGCTTCTCTG TGTTGATGTT CTAGTGTTTA CTGTTTTATC
  TTGAGAGTCC ATGAATGTAT CTTCAGTCTT GTGAAGGATT GGCTGACAGT CACTTCCTAG
  W
  ACTGTATACT CCCACCAGCT GTGGAACCCA CTCTGTCTGG AACTCAGAGA TCTTCTGCTT
  CTCCCTCTGA AGTGCTGGGA TTACACTACC CCAGGCTTAA ATAATTGTTT AATATTCGTG
  TGTATGTACA TGTATGTGAA CACACTTCCT GCCCCAGCAT GCAAATGGAG GTCAGAAGAC
  AACATTGGTT CTCTCCTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380146519	MGP_WTSI_10_41241320	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242296029					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380146519	MGP_WTSI_10_41241320	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:41397510 () rs orientation: forward

Symbol	Name	Function Class
Cd164	CD164 antigen	within coordinates
Cpgi1473	CpG island 1473	1313 bp distal
Tssr93050	transcription start site region 93050	1998 bp downstream
Tssr93051	transcription start site region 93051	1771 bp downstream
Tssr93052	transcription start site region 93052	1681 bp downstream
Tssr93053	transcription start site region 93053	1655 bp downstream
Tssr93054	transcription start site region 93054	1587 bp downstream
Tssr93055	transcription start site region 93055	1553 bp downstream
Tssr93056	transcription start site region 93056	1525 bp downstream
Tssr93057	transcription start site region 93057	1514 bp downstream
Tssr93058	transcription start site region 93058	980 bp downstream