CGAGGGTGAA AGAGCTGGAC
ACTCACGTCA GTTCTTGTGT GACTTGGGAG CTCTGCAGCT CTTCCTGGAC CTGGTCAGAC
AGCGTCTGCA CCCAGCGCAG GTAATCCCAG AAGCGGTTCA GGGCCTGCTC CCAGGGTTGG
TTGCTTTGCC ACTCGAGCTG ATCTGTCACC TCCGGCTCTC CCTCGGCTAG GCATCCTGTG
W
AGAGTAAGTT TAAGGCTGGG TCAGGACCTA CAGTCTTTTT GGGTCTCTTT GAAGTGGGTC
TGGAGGCTGT GGAGTCTGTT TAGATACTAC AAGCATGCAC TGTCTTGTAT CCTATGTAGT
TCAGAGCCGA GACTAGGCAG GTGTGGAATT AGAAAATGTA TACCCCACTT TTAAGAGCAA
CTAAGAAATC AACTTTTTAT
W = A/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss370754805 | MGP_WTSI_7_20283002 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | A | A | A | T | T | T | T | T | A | T | A | A | T | T | T | T | T | T | T | T | A | T | A | T | T | T | T | A | T | T | T | A | T | A | A | T | A | T | A | T | A | T | T | A | T | T | A | A | T | T | T | T |
| SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
| rs242303724 | SNP | A | A | A | T | T | T | T | T | A | T | A | A | T | T | T | T | T | T | T | T | A | T | A | T | T | T | T | A | T | T | T | A | T | A | A | T | A | T | A | T | A | T | T | A | T | T | A | A | T | T | T | T | ||||
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
|---|---|---|---|---|---|---|
| ss370754805 | MGP_WTSI_7_20283002 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/T |
| Location: Chr7:19431578 () rs orientation: forward | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Apoe | apolipoprotein E | within coordinates | ||||||
| Cpgi18507 | CpG island 18507 | 575 bp distal | ||||||
| Cpgi18508 | CpG island 18508 | 746 bp proximal | ||||||
| D7Mit57 | DNA segment, Chr 7, Massachusetts Institute of Technology 57 | 118 bp proximal | ||||||
| Gm71725 | predicted gene, 71725 | within coordinates | ||||||
| Rr155346 | regulatory region 155346 | 978 bp distal | ||||||
| Rr167194 | regulatory region 167194 | within coordinates | ||||||
| Tssr2112 | transcription start site region 2112 | 1192 bp downstream | ||||||
| Tssr2113 | transcription start site region 2113 | 1162 bp downstream | ||||||
| Tssr2114 | transcription start site region 2114 | 1036 bp downstream | ||||||
| Tssr2115 | transcription start site region 2115 | 1008 bp downstream | ||||||
| Tssr2116 | transcription start site region 2116 | 938 bp downstream | ||||||
| Tssr2117 | transcription start site region 2117 | 884 bp downstream | ||||||
| Tssr2118 | transcription start site region 2118 | 789 bp downstream | ||||||
| Tssr2119 | transcription start site region 2119 | 812 bp upstream | ||||||
| Tssr2120 | transcription start site region 2120 | 739 bp downstream | ||||||
| Tssr2121 | transcription start site region 2121 | 713 bp downstream | ||||||
| Tssr2122 | transcription start site region 2122 | 2 bp downstream | ||||||
| Tssr64880 | transcription start site region 64880 | 1379 bp downstream | ||||||
| Tssr64881 | transcription start site region 64881 | 1316 bp downstream | ||||||
| Tssr64882 | transcription start site region 64882 | 1257 bp downstream | ||||||
| Tssr64883 | transcription start site region 64883 | 1240 bp downstream | ||||||
| Tssr64884 | transcription start site region 64884 | 1212 bp downstream | ||||||
| Tssr64885 | transcription start site region 64885 | 1134 bp downstream | ||||||
| Tssr64886 | transcription start site region 64886 | 1099 bp downstream | ||||||
| Tssr64887 | transcription start site region 64887 | 1081 bp downstream | ||||||
| Tssr64888 | transcription start site region 64888 | 863 bp downstream | ||||||
| Tssr64889 | transcription start site region 64889 | 756 bp downstream | ||||||
| Tssr64890 | transcription start site region 64890 | 722 bp downstream | ||||||
| Tssr64891 | transcription start site region 64891 | 694 bp downstream | ||||||
| Tssr64892 | transcription start site region 64892 | 663 bp downstream | ||||||
| Tssr64893 | transcription start site region 64893 | 569 bp downstream | ||||||
| Tssr64894 | transcription start site region 64894 | 155 bp downstream | ||||||
| Tssr64895 | transcription start site region 64895 | 76 bp downstream | ||||||
| Tssr64896 | transcription start site region 64896 | 52 bp downstream | ||||||
| Tssr70973 | transcription start site region 70973 | 1324 bp upstream | ||||||
| Tssr70974 | transcription start site region 70974 | 1291 bp upstream | ||||||
| Tssr70975 | transcription start site region 70975 | 1266 bp upstream | ||||||
| Tssr70976 | transcription start site region 70976 | 1214 bp upstream | ||||||
| Tssr70977 | transcription start site region 70977 | 1193 bp upstream | ||||||
| Tssr70978 | transcription start site region 70978 | 1170 bp upstream | ||||||
| Tssr70979 | transcription start site region 70979 | 1162 bp upstream | ||||||
| Tssr70980 | transcription start site region 70980 | 1148 bp upstream | ||||||
| Tssr70981 | transcription start site region 70981 | 1124 bp upstream | ||||||
| Tssr70982 | transcription start site region 70982 | 1095 bp upstream | ||||||
| Tssr70983 | transcription start site region 70983 | 1074 bp upstream | ||||||
| Tssr70984 | transcription start site region 70984 | 1014 bp upstream | ||||||
| Tssr70985 | transcription start site region 70985 | 979 bp upstream | ||||||
| Tssr70986 | transcription start site region 70986 | 950 bp upstream | ||||||
| Tssr70987 | transcription start site region 70987 | 905 bp upstream | ||||||
| Tssr70988 | transcription start site region 70988 | 886 bp upstream | ||||||
| Tssr70989 | transcription start site region 70989 | 848 bp upstream | ||||||
| Tssr70990 | transcription start site region 70990 | 829 bp upstream | ||||||
| Tssr70991 | transcription start site region 70991 | 799 bp upstream | ||||||
| Tssr70992 | transcription start site region 70992 | 787 bp upstream | ||||||
| Tssr70993 | transcription start site region 70993 | 758 bp upstream | ||||||
| Tssr70994 | transcription start site region 70994 | 743 bp upstream | ||||||
| Tssr70995 | transcription start site region 70995 | 710 bp upstream | ||||||
| Tssr70996 | transcription start site region 70996 | 684 bp upstream | ||||||
| Tssr70997 | transcription start site region 70997 | 618 bp upstream | ||||||
| Tssr70998 | transcription start site region 70998 | 598 bp upstream | ||||||
| Tssr70999 | transcription start site region 70999 | 542 bp upstream | ||||||
| Tssr71000 | transcription start site region 71000 | 131 bp upstream | ||||||
| Tssr71001 | transcription start site region 71001 | 65 bp upstream | ||||||
| Tssr71002 | transcription start site region 71002 | 46 bp upstream | ||||||
| Tssr71003 | transcription start site region 71003 | 18 bp upstream | ||||||
| Tssr71004 | transcription start site region 71004 | within coordinates | ||||||
| Tssr71005 | transcription start site region 71005 | 338 bp downstream | ||||||
| Tssr71006 | transcription start site region 71006 | 371 bp downstream | ||||||
| Tssr71007 | transcription start site region 71007 | 429 bp downstream | ||||||
| Tssr71008 | transcription start site region 71008 | 535 bp downstream | ||||||
| Tssr71009 | transcription start site region 71009 | 553 bp downstream | ||||||
| Tssr71010 | transcription start site region 71010 | 697 bp downstream | ||||||
| Tssr71011 | transcription start site region 71011 | 730 bp downstream | ||||||
| Tssr71012 | transcription start site region 71012 | 766 bp downstream | ||||||
| Tssr71013 | transcription start site region 71013 | 1392 bp downstream | ||||||
| Tssr71014 | transcription start site region 71014 | 1941 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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