rs242304991 SNP Detail

Summary

• ID
  rs242304991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126046333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCAGGGC CCGGAGCTTG
  AAGATCATCT GGGAAGAGGA CAGCAGGCAT CAGGAATGAC AAGTGCTTCC TCAGAAGGAA
  AGGGGGCCAG GGTGGCATAA AATACCACGC CCTGTGAGCA CCCTGTGGAC ACATGCTCTG
  CATGGGCTCC CCCGGGGCAG AGAGGTGACA GCTCACCGGC AGGGGGTCGA CATAGAGGAT
  R
  AGGAAGTGGA GGGACATGGA CAGGCAGATG GAACCCAGCA GCCAGATGTT CACCCAGGGT
  GGCATCCGCA GTAGGGACTG GTTCTCAGAC AGGCTAGAAC AAAAGGCCAG GCAGATGGAG
  AGACAGGGAT ACAGAGAAAG ATGTGGTAAG GCAGAGTGGA GGGAGAAGAG AGGCGGGGAG
  AACATGAAGG CACAGGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373068748	MGP_WTSI_7_133590675	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242304991					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373068748	MGP_WTSI_7_133590675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126046333 () rs orientation: forward

Symbol	Name	Function Class
Atp2a1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	within coordinates
Rabep2	rabaptin, RAB GTPase binding effector protein 2	1254 bp downstream
Tssr2394	transcription start site region 2394	477 bp downstream
Tssr69022	transcription start site region 69022	1103 bp downstream
Tssr69023	transcription start site region 69023	744 bp upstream
Tssr74663	transcription start site region 74663	1107 bp upstream
Tssr74664	transcription start site region 74664	573 bp upstream
Tssr74665	transcription start site region 74665	247 bp upstream
Tssr74666	transcription start site region 74666	188 bp upstream
Tssr74667	transcription start site region 74667	160 bp upstream
Tssr74668	transcription start site region 74668	5 bp downstream
Tssr74669	transcription start site region 74669	44 bp downstream
Tssr74670	transcription start site region 74670	280 bp downstream
Tssr74671	transcription start site region 74671	323 bp downstream
Tssr74672	transcription start site region 74672	336 bp downstream
Tssr74673	transcription start site region 74673	481 bp downstream
Tssr74674	transcription start site region 74674	510 bp downstream
Tssr74675	transcription start site region 74675	519 bp downstream
Tssr74676	transcription start site region 74676	734 bp downstream
Tssr74677	transcription start site region 74677	759 bp downstream
Tssr74678	transcription start site region 74678	791 bp downstream
Tssr74679	transcription start site region 74679	815 bp downstream
Tssr74680	transcription start site region 74680	833 bp downstream
Tssr74681	transcription start site region 74681	860 bp downstream
Tssr74682	transcription start site region 74682	874 bp downstream
Tssr74683	transcription start site region 74683	1072 bp downstream
Tssr74684	transcription start site region 74684	1175 bp downstream
Tssr74685	transcription start site region 74685	1201 bp downstream
Tssr74686	transcription start site region 74686	1433 bp downstream
Tssr74687	transcription start site region 74687	1487 bp downstream
Tssr74688	transcription start site region 74688	1591 bp downstream
Tssr74689	transcription start site region 74689	1660 bp downstream