rs242310538 SNP Detail

Summary

• ID
  rs242310538
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17842158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATACCTA GGAAACGTGA
  GGTCAGCTTT CATACAGTCC TAAGGCCTTC CTAGAGCTCC GGGGCAAAGC TAGTATTGCC
  AGAACTGGAG AAGAAGAGGC TGGGTCAAGT ACCTGTACTG GGTGGTCTGA AGTCGCCACC
  CCACTGAGCC ATCTCTGCTA GCTAACCAAA GCTAAGCACT GCAACTTCCC CGTAGTGGGC
  K
  GGATGCACTG AACACTCTGA CCTGGCCCCT CCACGGGCCA GGCAAGTCCT TGAGGATCTT
  TAGCAATCAC ACATCCCAGG TCAATAAACT GAAAACGGAT AGAATGAACA TGATCAGTGA
  AAAGATACAG GGAAGGAAAA TGATGTACCT AGTGCCTCCC CAAGTCAAAG TCCTCTGCCC
  CGATAAAAAA CACCGACCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118620	MGP_WTSI_3_17687994	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242310538					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118620	MGP_WTSI_3_17687994	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17842158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12994	CpG island 12994	863 bp distal
Gm10742	predicted gene 10742	1096 bp upstream
Gm56811	predicted gene, 56811	856 bp upstream
Gm66000	predicted gene, 66000	within coordinates
Mir124-2hg	Mir124-2 host gene (non-protein coding)	1927 bp upstream
Rr573840	regulatory region 573840	1946 bp distal
Rr573841	regulatory region 573841	1648 bp distal
Rr573842	regulatory region 573842	867 bp distal
Rr573843	regulatory region 573843	366 bp distal
Rr573844	regulatory region 573844	838 bp proximal
Rr573845	regulatory region 573845	1339 bp proximal
Rr573846	regulatory region 573846	1463 bp proximal
Tssr28480	transcription start site region 28480	1733 bp upstream
Tssr28481	transcription start site region 28481	1898 bp upstream
Tssr28482	transcription start site region 28482	1962 bp upstream
Tssr32676	transcription start site region 32676	1676 bp upstream
Tssr32677	transcription start site region 32677	1149 bp upstream
Tssr32678	transcription start site region 32678	1613 bp downstream