rs242315941 SNP Detail

Summary

• ID
  rs242315941
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132239804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCAAG TTCTACTCCT
  TGAAGTGACA GGGAGCCTTT AGAGCTTTCA TCCTGTTGGG GGCCTGAGTG AAGCCTTCAA
  GATGCTGCTC CCTCCGGAAG CCCCCTTCAG CCCTGCTGAA AAGTCACCTT GCCCCTGCTC
  CTCAACACCT TTAACCTCCT CCTGGCTCTG CTTACCAAAC ACATGGAGCT TCAGTACCGC
  R
  TTTACAAGCC TTACCCCTTC CTTCCAGTTA ATGGACTTTA TTACCAGCCA TGTGTGAAGA
  CACTTCCATT TAGAAAGGTA AAACTGATTG TCAACCACAC TGCATTTTTT TTTTTTTGAC
  TGCATTAAGC TGTGGAAAAC ATCACTTAAA GCAGTAATCA TGTCTATCTC TGGATCACTC
  CCTCAGTGGC ATGGCATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333922	CHEV_4_132068408	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242315941					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132239804 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	1718 bp distal
Gm68741	predicted gene, 68741	468 bp downstream
Rr377206	regulatory region 377206	1424 bp downstream
Rr377207	regulatory region 377207	576 bp upstream
Tssr43680	transcription start site region 43680	1984 bp upstream