rs242322522 SNP Detail

Summary

• ID
  rs242322522
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142037757 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTCTG GGGAGCTGGA
  ATCAGGGGTG GTGTGTGTGT GTGTGAGTGT GTGTGTGTGT GACAGAAATG GCATTTTCAA
  TTATGCCTAT TTAGTATGCT TTGATTTTTA AATTATGTGC ATGCATTACT TTAGTAAAAG
  TAAAAATTAA GAAAGAAATT TAAAAGCGCA AAGGATAGAC AAGCCCTGCT GCGAGTTTCG
  C
  CACTCCTCTG ATCCCACCGT GTAATGTGCT CTGCAGCCTC CAGGCTTGAG CTTCAGTGCA
  GACGAGTATG GGAGGCTCAC TGGAAGCATC CCAAGTGAAT GCAGCACAGC AAAGACTCTA
  GACACAAAAG ATCTGGGGGA AGCAGTTCAT TTAATGATGC AGGGTGTTGA CATGGTCATG
  TAATTGCTGC AGGAGAGCAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321394829	CHEV_4_141866361	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242322522					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142037757 () rs orientation: forward

Symbol	Name	Function Class
Gm13052	predicted gene 13052	within coordinates
Gm54267	predicted gene, 54267	132 bp downstream
Gm68665	predicted gene, 68665	within coordinates
Kazn	kazrin, periplakin interacting protein	within coordinates
Rr87137	regulatory region 87137	within coordinates
Rr87138	regulatory region 87138	1444 bp proximal