rs242325396 SNP Detail

Summary

• ID
  rs242325396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCATCTA TTGTCCTCTT
  CTAGAAGTTG GGGACAGTAC ACTTTGTCTG GGTAATTTGA TGACAAAAAA GAATGTGTCG
  AATGGATTTA TGTGTCATGG TACAGTGCTT TTCCCCTTGA ATTGTTTTTC TCTCTCAATA
  ATCTTGTAAG GAAGATGTGT TTTCTGTTTA TCAGGTAGAT AGGAGCCTGA GCTTGGGCTA
  Y
  GGTTCAGTGA CTTGTCCAGG ATTACAGTGA GGACACACAG AGAGGACTGA AAAGGGCCTT
  GCAGAGGGTG ACATGCTGTG GGCTTAGACA AGGCACAGGA GCAAACACGC AGCAACCGAG
  GCAGTCTCTT CTGTTGTCAT TATTCTGAAA ATCTTGGGTC TTAGTTTTTA TGCCTAATAG
  GTATTCCTCA AAGGATCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267195	CHEV_2_43409928	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242325396					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444420 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	921 bp upstream
Rr556278	regulatory region 556278	180 bp proximal
Rr556279	regulatory region 556279	629 bp proximal
Rr556280	regulatory region 556280	957 bp proximal
Tssr17589	transcription start site region 17589	913 bp upstream
Tssr17590	transcription start site region 17590	937 bp upstream
Tssr17591	transcription start site region 17591	954 bp upstream