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rs242329667 SNP Detail
Summary
  • ID
    rs242329667
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr9:46141611 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGAATTTCG CGACCGCATG
CGCACACACG TAGACTCTCT GCGCACACAG CTAGCGCCCC ACAGCGAACA GATGCGCGAG
AGCCTGGCCC AGCGCCTGGC TGAGCTCAAG AGCAACCCTA CCTTGAACGA GTACCACACC
AGGGCCAAAA CCCACCTGAA GACACTTGGC GAGAAAGCCA GACCTGCGCT GGAGGACCTG
M
GCCATAGTCT GATGCCCATG CTGGAGACGC TTAAGACCCA AGTCCAGAGT GTGATCGACA
AGGCCAGCGA GACTCTGACT GCCCAGTGAG GTGCCCGCTT CCACTCCCCA CCCCCGCATT
GGCTTTCTTA CAATAAACCT TTCCAAAATG GAATAGCTTC TTTCTTTGGG GGACATAGGG
CGGGCGCTAA GGGGACATCA                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss377451223 MGP_WTSI_9_46038396 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242329667 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss377451223 MGP_WTSI_9_46038396 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:46141611 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoa1 apolipoprotein A-I within coordinates
Cpgi21701 CpG island 21701 within coordinates
Rr195182 regulatory region 195182 1411 bp distal
Rr195183 regulatory region 195183 611 bp distal
Rr206362 regulatory region 206362 within coordinates
Tssr84839 transcription start site region 84839 1939 bp downstream
Tssr84840 transcription start site region 84840 1599 bp downstream
Tssr84841 transcription start site region 84841 1469 bp downstream
Tssr84842 transcription start site region 84842 1367 bp downstream
Tssr84843 transcription start site region 84843 1333 bp downstream
Tssr84844 transcription start site region 84844 1159 bp downstream
Tssr84845 transcription start site region 84845 1122 bp downstream
Tssr84846 transcription start site region 84846 1067 bp downstream
Tssr84847 transcription start site region 84847 405 bp downstream
Tssr84848 transcription start site region 84848 327 bp downstream
Tssr84849 transcription start site region 84849 291 bp downstream
Tssr84850 transcription start site region 84850 249 bp downstream
Tssr84851 transcription start site region 84851 214 bp downstream
Tssr84852 transcription start site region 84852 117 bp downstream
Tssr84853 transcription start site region 84853 83 bp downstream
Tssr84854 transcription start site region 84854 70 bp downstream
Tssr84855 transcription start site region 84855 50 bp downstream
Tssr84856 transcription start site region 84856 39 bp downstream
Tssr84857 transcription start site region 84857 72 bp upstream
Tssr84858 transcription start site region 84858 91 bp upstream
Tssr89313 transcription start site region 89313 338 bp upstream
Tssr89314 transcription start site region 89314 310 bp upstream
Tssr89315 transcription start site region 89315 287 bp upstream
Tssr89316 transcription start site region 89316 267 bp upstream
Tssr89317 transcription start site region 89317 258 bp upstream
Tssr89318 transcription start site region 89318 234 bp upstream
Tssr89319 transcription start site region 89319 224 bp upstream
Tssr89320 transcription start site region 89320 211 bp upstream
Tssr89321 transcription start site region 89321 186 bp upstream
Tssr89322 transcription start site region 89322 103 bp upstream
Tssr89323 transcription start site region 89323 51 bp upstream
Tssr89324 transcription start site region 89324 23 bp upstream
Tssr89325 transcription start site region 89325 within coordinates
Tssr89326 transcription start site region 89326 27 bp downstream
Tssr89327 transcription start site region 89327 148 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory