rs242333299 SNP Detail

Summary

• ID
  rs242333299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88193133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAACTTG GCCTGGTGAG
  CACAAGCTAC CGGGTATGAC AACTTGCACC TCTTTGTTGG CAGCCAAGAG TCTCTCACAA
  GTGTACTAGC AGTCTGTGCA GTTGAATCCT GCAGGACTCT TCTGTGACAG CCAGGAGAGA
  TTGACCGTTT CTGGGAACTC TGTTGTGGGG AGTCTGGATT TAGTCTCTTC AAGTGCTCTG
  M
  TTGACAGGGA AGAGCTGCAG CAGCTTTCAT TGGCGATACT CTGCCACACG AAGTCACCTT
  CGCCCGCTGC GGTGACAGAC AATACTTCTG ATAAAGTCTG TTGAATTCTT TTTTAAGCTC
  ATCATAGTTA TCCTTCCCAC AGCCTGGAGA GCCTATGCTT GGTGCTGAAA TAGCTGTACT
  GGGCCACACT GCCTTACCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C58/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss350399237	MGP_WTSI_1_90161986	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/10J	C58/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs242333299					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399237	MGP_WTSI_1_90161986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88193133 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1068 bp proximal
Rr28029	regulatory region 28029	1613 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	546 bp upstream