rs242335028 SNP Detail

Summary

• ID
  rs242335028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142210726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAATCTC TGCTCCATAG
  GCCCAGGGGA TTTCTTGCTG CAAAGAAACA TGTGAGAGAC CAGTGCGGAA TAATCAAGAA
  ACAAATTTGT TCGAGCTCCC TTGGGTAACT AAAAGTCATC TTTGCCCACT TCATCAAGAC
  CCAGACCGAT CCTCCCAATA CCCTCTGTGC CACCAACCAC TTGCGATCAG CAGGCTATAG
  Y
  TACAGCAGTT AGTTCTGGGG GCGGGGGGCA GGCAGACGGA GCTGACCTCG AAGTCCCTTC
  CCAAAGCCAA GACCACACTG GCTGGTTCAG CCCAGGTGTC CAGGAGAAGC AAGCAGGAGA
  TTGACCAGGA GGCAAGGGAC AGGTGAGGGC CCAGGGAAGG CCCGAATTTG TTGGAGTGGG
  GAGGCAGAGA GGAAGGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454601	MGP_WTSI_7_149842894	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242335028					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454601	MGP_WTSI_7_149842894	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142210726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19967	CpG island 19967	1281 bp proximal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1993 bp upstream
Rr658247	regulatory region 658247	within coordinates
Rr658248	regulatory region 658248	497 bp proximal
Rr658249	regulatory region 658249	1815 bp proximal
Rr658250	regulatory region 658250	1998 bp proximal
Tssr70241	transcription start site region 70241	1543 bp upstream
Tssr70242	transcription start site region 70242	1607 bp upstream
Tssr70243	transcription start site region 70243	1871 bp upstream
Tssr70244	transcription start site region 70244	1921 bp upstream
Tssr75881	transcription start site region 75881	1277 bp upstream
Tssr75882	transcription start site region 75882	1167 bp upstream
Tssr75883	transcription start site region 75883	931 bp upstream
Tssr75884	transcription start site region 75884	891 bp upstream
Tssr75885	transcription start site region 75885	822 bp upstream
Tssr75886	transcription start site region 75886	799 bp upstream
Tssr75887	transcription start site region 75887	483 bp downstream
Tssr75888	transcription start site region 75888	1768 bp downstream