rs242338078 SNP Detail

Summary

• ID
  rs242338078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119392794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATACAT CAGATAGGGG
  TTTTGTTTTG AATCTGGTTT TGTTGTTGTT TTGAGACAGT CTCACTATTT AGCCATCGCC
  TGCTTGAACA TCACCATGAG GACCAGGCTG GCCTCCAACT TTCCATGCTG GTATTGTAGG
  TCCATTCCAC TATGCCTGGT AAGTTTGATA CTGTGTCCAC AATCTCAACA AATGTGTACA
  R
  CGCATCCAAA AATCTGTGCA CAGCATATTC CCCCCCACCC CCCCCCAAAA AACCTGAGAG
  AGTCTGTGGT AATTCTGACA ATAAAACTGG ACTAGGCAGG TCACTTGGGC GCAGTGGCAC
  CTGCCTGAGA ACAGTGTGCA GAGCTGTCAC GTTCCAGGTC CCAGGGGTCT AGAATGAACA
  GACCTGATAG AGCATGCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372922749	MGP_WTSI_7_126937085	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242338078					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372922749	MGP_WTSI_7_126937085	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119392794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	96 bp proximal
Eri2	exoribonuclease 2	within coordinates
Rexo5	RNA exonuclease 5	435 bp upstream
Rr654660	regulatory region 654660	within coordinates
Rr654661	regulatory region 654661	386 bp proximal
Rr654662	regulatory region 654662	477 bp proximal
Rr654663	regulatory region 654663	1700 bp proximal
Tssr68757	transcription start site region 68757	170 bp upstream
Tssr68758	transcription start site region 68758	416 bp upstream
Tssr68759	transcription start site region 68759	450 bp upstream
Tssr68760	transcription start site region 68760	531 bp upstream
Tssr68761	transcription start site region 68761	697 bp upstream
Tssr74500	transcription start site region 74500	374 bp downstream
Tssr74501	transcription start site region 74501	387 bp downstream