rs242346385 SNP Detail

Summary

• ID
  rs242346385
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158101159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATCGCAG GGATGCAAAC AGATTCCCCC ATGAACGTCG
  ATGAGGATAT GGTTGTGTTT AAATCCAGAG CTGGTGTGTG TGTGTGTGTG TGTGTGCGCG
  Y
  GTGTGTACAT ACATGTCACA TGAGTGCATG GGTGACTGAC AGCTTTTGTG GGAGCAGAGG
  CTCAGCTCCA GTGTCCCATG TGGCAACTGG AGTGAGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	FVB/NJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	PL/J	RF/J	SEA/GnJ	ST/bJ	SWR/J
ss356277809	MGP_WTSI_2_158084975	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	FVB/NJ	LEWES/EiJ	LG/J	NOD/ShiLtJ	PL/J	RF/J	SEA/GnJ	ST/bJ	SWR/J
rs242346385					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356277809	MGP_WTSI_2_158084975	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158101159 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	Intron
Cpgi12591	CpG island 12591	1057 bp distal
Gm34571	predicted gene, 34571	1195 bp upstream
Rr568712	regulatory region 568712	1949 bp distal
Rr568713	regulatory region 568713	1135 bp distal
Rr568714	regulatory region 568714	486 bp distal
Rr568715	regulatory region 568715	221 bp distal
Tssr727	transcription start site region 727	1020 bp downstream
Tssr21302	transcription start site region 21302	1130 bp downstream
Tssr21303	transcription start site region 21303	1030 bp downstream
Tssr21304	transcription start site region 21304	1007 bp downstream
Tssr21305	transcription start site region 21305	993 bp downstream
Tssr21306	transcription start site region 21306	963 bp downstream
Tssr27222	transcription start site region 27222	276 bp upstream