rs242358165 SNP Detail

Summary

• ID
  rs242358165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116742558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGCAATT CCTTTGCCAC
  ATCCATTAGA GTAAGAAGTC CCAGTCAGCA CAACAACAGT TGCACTGAAT GTTTTTCTCT
  ATGAGGATAG TGCATCTTTA ACATTTAAAG ACAAACCTGC TCCAATACAC GCCCACAGAA
  ACTGGTCCCT GGAGGATCAG CCAAATCAGT TAAAATCTGC AATACTGGCC AATATTCTTT
  K
  ATAAAACAGG AGACCGCAGC TTTAAAGGGG GAAAATGCAG ACGTTGGATA AAAACAGCAA
  GAAATAGTCA TTTTCATTAA TAGGTCTCAA ACAGCATGAA ACAGCCATTA CTATCTAAGC
  TTTACACAAT CCTCTCTGCA GACCCCTCTT CAGCATCACT CCCAAAGCTG AGTAACTTCA
  GAGCAGTAGT ACTCTTAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384861299	MGP_WTSI_11_116713046	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242358165					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384861299	MGP_WTSI_11_116713046	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116742558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	234 bp proximal
Mettl23	methyltransferase like 23	1992 bp downstream
Mfsd11	major facilitator superfamily domain containing 11	708 bp upstream
Rr246190	regulatory region 246190	1957 bp distal
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	1262 bp upstream
Rr403147	regulatory region 403147	1814 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	452 bp upstream
Tssr106001	transcription start site region 106001	753 bp upstream
Tssr106002	transcription start site region 106002	1522 bp upstream
Tssr106003	transcription start site region 106003	1725 bp upstream
Tssr111999	transcription start site region 111999	1084 bp upstream
Tssr112000	transcription start site region 112000	801 bp upstream
Tssr112001	transcription start site region 112001	538 bp upstream
Tssr112002	transcription start site region 112002	461 bp upstream
Tssr112003	transcription start site region 112003	417 bp upstream
Tssr112004	transcription start site region 112004	257 bp upstream
Tssr112005	transcription start site region 112005	381 bp downstream
Tssr112006	transcription start site region 112006	426 bp downstream
Tssr112007	transcription start site region 112007	470 bp downstream
Tssr112008	transcription start site region 112008	591 bp downstream
Tssr112009	transcription start site region 112009	696 bp downstream
Tssr112010	transcription start site region 112010	1351 bp downstream