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rs242358165 SNP Detail
Summary
  • ID
    rs242358165
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr11:116742558 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATTGCAATT CCTTTGCCAC
    ATCCATTAGA GTAAGAAGTC CCAGTCAGCA CAACAACAGT TGCACTGAAT GTTTTTCTCT
    ATGAGGATAG TGCATCTTTA ACATTTAAAG ACAAACCTGC TCCAATACAC GCCCACAGAA
    ACTGGTCCCT GGAGGATCAG CCAAATCAGT TAAAATCTGC AATACTGGCC AATATTCTTT
    K
    ATAAAACAGG AGACCGCAGC TTTAAAGGGG GAAAATGCAG ACGTTGGATA AAAACAGCAA
    GAAATAGTCA TTTTCATTAA TAGGTCTCAA ACAGCATGAA ACAGCCATTA CTATCTAAGC
    TTTACACAAT CCTCTCTGCA GACCCCTCTT CAGCATCACT CCCAAAGCTG AGTAACTTCA
    GAGCAGTAGT ACTCTTAACA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384861299 MGP_WTSI_11_116713046 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242358165 SNP G G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G G G G G G T G G G G G G G T G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss384861299 MGP_WTSI_11_116713046 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:116742558 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi4197 CpG island 4197 234 bp proximal
Mettl23 methyltransferase like 23 1992 bp downstream
Mfsd11 major facilitator superfamily domain containing 11 708 bp upstream
Rr246190 regulatory region 246190 1957 bp distal
Rr246191 regulatory region 246191 within coordinates
Rr403146 regulatory region 403146 1262 bp upstream
Rr403147 regulatory region 403147 1814 bp upstream
Srsf2 serine and arginine-rich splicing factor 2 within coordinates
Tssr106000 transcription start site region 106000 452 bp upstream
Tssr106001 transcription start site region 106001 753 bp upstream
Tssr106002 transcription start site region 106002 1522 bp upstream
Tssr106003 transcription start site region 106003 1725 bp upstream
Tssr111999 transcription start site region 111999 1084 bp upstream
Tssr112000 transcription start site region 112000 801 bp upstream
Tssr112001 transcription start site region 112001 538 bp upstream
Tssr112002 transcription start site region 112002 461 bp upstream
Tssr112003 transcription start site region 112003 417 bp upstream
Tssr112004 transcription start site region 112004 257 bp upstream
Tssr112005 transcription start site region 112005 381 bp downstream
Tssr112006 transcription start site region 112006 426 bp downstream
Tssr112007 transcription start site region 112007 470 bp downstream
Tssr112008 transcription start site region 112008 591 bp downstream
Tssr112009 transcription start site region 112009 696 bp downstream
Tssr112010 transcription start site region 112010 1351 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory