rs242365739 SNP Detail

Summary

• ID
  rs242365739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115566814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCATA GAAGGAAATT
  ATTTACAAGG GAAGTTAACT CTAAACCTGG TGGAGAGTCA GCCCAGGTTC TTCCAAATCA
  AATGGAAGGG AGCTAGGACC CCAGATGAAA GGGAGTCACT TGGAGGGTGC ACAGCCTGGA
  ATCTCCGAGA CACCGACTTC TCTCTCCACT TCATTGGGGA CCCTGCCAGC GGGCAAGTGT
  Y
  TGGAATCAGT TTCCCCCCAC TCCAGACAGT CCGAAAGGGG CTGGAAGTGA GACAGGAGGA
  GGTGCCCACA GAAGGCCGGG GAGGTGACAA CTTGGGAAAC CTGGCTCGAG GCTGGGCATT
  CTCTCAGCTG ACCATAGGGG TCCCAGGTGT GGAGAAAAGG GGTTTAGGGG AGTTACAAGG
  CACACTTAAT TTGGACAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366356324	MGP_WTSI_5_115878764	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242365739					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366356324	MGP_WTSI_5_115878764	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115566814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	265 bp proximal
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	920 bp upstream
Rr618242	regulatory region 618242	within coordinates
Rr618243	regulatory region 618243	739 bp proximal
Tssr48228	transcription start site region 48228	750 bp upstream
Tssr48229	transcription start site region 48229	767 bp upstream
Tssr48230	transcription start site region 48230	794 bp upstream
Tssr48231	transcription start site region 48231	830 bp upstream
Tssr48232	transcription start site region 48232	867 bp upstream
Tssr48233	transcription start site region 48233	941 bp upstream
Tssr48234	transcription start site region 48234	965 bp upstream
Tssr48235	transcription start site region 48235	1004 bp upstream
Tssr48236	transcription start site region 48236	1189 bp upstream
Tssr48237	transcription start site region 48237	1562 bp upstream
Tssr48238	transcription start site region 48238	1825 bp upstream
Tssr52797	transcription start site region 52797	740 bp downstream