rs242370538 SNP Detail

Summary

• ID
  rs242370538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45225519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAAACA CTGCTGCATT
  TTTAACTACT CTGTAACTAT GGCAACAAAT GATAAATAAC TATTTATGCC AGCTTCATTG
  TGAAACTGGC CAATTACCAA AACACTCCGG GAATAAATCC TTCGAATGGT TAACTGACTG
  TGGAGAGACG AATGTGAACA ATGTATTAAC AGATTCTTCA AGATTGAGCC TCAATAGAGA
  R
  CACTTAAGTG CCATTTGTTT TCCATCTGGG GCCACAAACA TGACTCTAGA GGATTACAAG
  AACAGTTCCT GTTTTGTTTT GTTAGGATTG CTTAAGCAAG TCGTTGTTAT AGGAAGGCAA
  AGGCCACTCT GTGGTGTGCA CGGTTCCATT TCTTGGATGG ATAGGTTTGC TTTTCAGTTC
  CTTCCAGTTT TTGTCCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390953891	MGP_WTSI_14_45607737	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A	G	A	A	A	G	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242370538					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A	G	A	A	A	G	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390953891	MGP_WTSI_14_45607737	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45225519 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	663 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	1999 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	133 bp upstream
Rr491040	regulatory region 491040	within coordinates
Rr491041	regulatory region 491041	1782 bp proximal
Tssr4380	transcription start site region 4380	706 bp downstream
Tssr125199	transcription start site region 125199	102 bp upstream
Tssr125200	transcription start site region 125200	130 bp upstream
Tssr125201	transcription start site region 125201	394 bp upstream
Tssr125202	transcription start site region 125202	514 bp upstream
Tssr125203	transcription start site region 125203	591 bp upstream
Tssr125204	transcription start site region 125204	834 bp upstream
Tssr128221	transcription start site region 128221	1611 bp downstream
Tssr128222	transcription start site region 128222	1788 bp downstream
Tssr128223	transcription start site region 128223	1840 bp downstream