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rs242371385 SNP Detail
Summary
  • ID
    rs242371385
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19431846 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGTGGAGTCT GTTTAGATAC
TACAAGCATG CACTGTCTTG TATCCTATGT AGTTCAGAGC CGAGACTAGG CAGGTGTGGA
ATTAGAAAAT GTATACCCCA CTTTTAAGAG CAACTAAGAA ATCAACTTTT TATTGTGTGT
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT ACCCTTGGAG GTCAGAGTTC TAGAGGGAAT
Y
GGCTCTCTCC TTCCACTATG TTGGTCTCAG AGTTAAGTCT TCAAGCTTTA TGATAAGCAC
CTTTACCCAC TAAGCCATCA ATCCTCTTAT AGTTAGGGGA AATCAAGGCC TAAAGAGTAT
ATAAAACAGC TGCTCAGGGC TATTGAATCT CAGAGAGGTC TCAGAACCGC CTCAGCCTCA
ACCCACCAGC AGAAGAGATC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754811 MGP_WTSI_7_20283270 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242371385 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754811 MGP_WTSI_7_20283270 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19431846 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 843 bp distal
Cpgi18508 CpG island 18508 478 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 2 bp distal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 1246 bp distal
Rr155347 regulatory region 155347 1755 bp proximal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 1460 bp downstream
Tssr2113 transcription start site region 2113 1430 bp downstream
Tssr2114 transcription start site region 2114 1304 bp downstream
Tssr2115 transcription start site region 2115 1276 bp downstream
Tssr2116 transcription start site region 2116 1206 bp downstream
Tssr2117 transcription start site region 2117 1152 bp downstream
Tssr2118 transcription start site region 2118 1057 bp downstream
Tssr2119 transcription start site region 2119 1080 bp upstream
Tssr2120 transcription start site region 2120 1007 bp downstream
Tssr2121 transcription start site region 2121 981 bp downstream
Tssr2122 transcription start site region 2122 256 bp upstream
Tssr64880 transcription start site region 64880 1647 bp downstream
Tssr64881 transcription start site region 64881 1584 bp downstream
Tssr64882 transcription start site region 64882 1525 bp downstream
Tssr64883 transcription start site region 64883 1508 bp downstream
Tssr64884 transcription start site region 64884 1480 bp downstream
Tssr64885 transcription start site region 64885 1402 bp downstream
Tssr64886 transcription start site region 64886 1367 bp downstream
Tssr64887 transcription start site region 64887 1349 bp downstream
Tssr64888 transcription start site region 64888 1131 bp downstream
Tssr64889 transcription start site region 64889 1024 bp downstream
Tssr64890 transcription start site region 64890 990 bp downstream
Tssr64891 transcription start site region 64891 962 bp downstream
Tssr64892 transcription start site region 64892 931 bp downstream
Tssr64893 transcription start site region 64893 837 bp downstream
Tssr64894 transcription start site region 64894 423 bp downstream
Tssr64895 transcription start site region 64895 344 bp downstream
Tssr64896 transcription start site region 64896 320 bp downstream
Tssr70973 transcription start site region 70973 1592 bp upstream
Tssr70974 transcription start site region 70974 1559 bp upstream
Tssr70975 transcription start site region 70975 1534 bp upstream
Tssr70976 transcription start site region 70976 1482 bp upstream
Tssr70977 transcription start site region 70977 1461 bp upstream
Tssr70978 transcription start site region 70978 1438 bp upstream
Tssr70979 transcription start site region 70979 1430 bp upstream
Tssr70980 transcription start site region 70980 1416 bp upstream
Tssr70981 transcription start site region 70981 1392 bp upstream
Tssr70982 transcription start site region 70982 1363 bp upstream
Tssr70983 transcription start site region 70983 1342 bp upstream
Tssr70984 transcription start site region 70984 1282 bp upstream
Tssr70985 transcription start site region 70985 1247 bp upstream
Tssr70986 transcription start site region 70986 1218 bp upstream
Tssr70987 transcription start site region 70987 1173 bp upstream
Tssr70988 transcription start site region 70988 1154 bp upstream
Tssr70989 transcription start site region 70989 1116 bp upstream
Tssr70990 transcription start site region 70990 1097 bp upstream
Tssr70991 transcription start site region 70991 1067 bp upstream
Tssr70992 transcription start site region 70992 1055 bp upstream
Tssr70993 transcription start site region 70993 1026 bp upstream
Tssr70994 transcription start site region 70994 1011 bp upstream
Tssr70995 transcription start site region 70995 978 bp upstream
Tssr70996 transcription start site region 70996 952 bp upstream
Tssr70997 transcription start site region 70997 886 bp upstream
Tssr70998 transcription start site region 70998 866 bp upstream
Tssr70999 transcription start site region 70999 810 bp upstream
Tssr71000 transcription start site region 71000 399 bp upstream
Tssr71001 transcription start site region 71001 333 bp upstream
Tssr71002 transcription start site region 71002 314 bp upstream
Tssr71003 transcription start site region 71003 286 bp upstream
Tssr71004 transcription start site region 71004 268 bp upstream
Tssr71005 transcription start site region 71005 70 bp downstream
Tssr71006 transcription start site region 71006 103 bp downstream
Tssr71007 transcription start site region 71007 161 bp downstream
Tssr71008 transcription start site region 71008 267 bp downstream
Tssr71009 transcription start site region 71009 285 bp downstream
Tssr71010 transcription start site region 71010 429 bp downstream
Tssr71011 transcription start site region 71011 462 bp downstream
Tssr71012 transcription start site region 71012 498 bp downstream
Tssr71013 transcription start site region 71013 1124 bp downstream
Tssr71014 transcription start site region 71014 1673 bp downstream
Tssr71015 transcription start site region 71015 1798 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory