rs242374864 SNP Detail

Summary

• ID
  rs242374864
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGAGG GACCGGACCG
  GGCTTTGGCG CTCCTTCCAA GAACAAGGCA CAACCTAACA AAGGGAGTGG CCTCACTGTC
  CCGGTAGATT TAAGGGTGGA ACTGCTCGCG GTAGCCAAAG CTAATCCGAA GTGTGGGGCG
  CGGCTAATTA GAATACTGAC TGGGTCCGCC CCAAAAGCCT TCACCCCGTG CCCTCTGACC
  Y
  GAGAGGATCC AGTACTGAGC AGCAGGCCAA GAAGTTACCT CGCCGGCCGC TGAATCCCCA
  GGGCTGCCCG CCCCAGTTCA GTCATGGAAA CCGCCAGCAC CCCCGAGGCC ACGGGGACAG
  GTGACCGACT CGCAGTGCGC CGATCTTTGC GCACCCCTTC GTAGGTCTCT GATCAGTTAA
  CCTGGGCGGC CGAGAGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535824	CHEV_10_128184934	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242374864					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	within coordinates
Gm31504	predicted gene, 31504	1996 bp downstream
Gm66065	predicted gene, 66065	1529 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	11 bp upstream
Rr224483	regulatory region 224483	1546 bp distal
Rr224484	regulatory region 224484	within coordinates
Rr385481	regulatory region 385481	within coordinates
Tssr96443	transcription start site region 96443	1404 bp downstream
Tssr96444	transcription start site region 96444	79 bp downstream
Tssr96445	transcription start site region 96445	within coordinates
Tssr96446	transcription start site region 96446	623 bp upstream
Tssr96447	transcription start site region 96447	873 bp upstream
Tssr99956	transcription start site region 99956	1626 bp upstream
Tssr99957	transcription start site region 99957	1566 bp upstream
Tssr99958	transcription start site region 99958	233 bp upstream
Tssr99959	transcription start site region 99959	134 bp upstream