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rs242383069 SNP Detail
Summary
  • ID
    rs242383069
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:6367429 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACTAGGTTC TAATTAGCCC
    TCACCCAGCA TGTATCTAGT CAAGAGCTGA TAATTGACAA GGACTCTTGT GGAAACTTGG
    CCTAAGCTTA GCCTGGGTAG GATAGTATCA GGTTAACCAG AGCTTAATGG GAATGAGATG
    AGCCCATAGG TGAAAATAGA GGTGGAGCTG CCAAGAAAGG CTTTGAAGTC ATAATTTGAT
    R
    AAAAAAAATG TGGACTTGGA AAGCTGTTAA GCTGTGAGAA AAAAAAAACA GTCCAAAGGA
    GTCACATATT TAACTACTTA AACCATAAAT GTATTCCTCC AAGAGAAGTG TAGATGCTGC
    AACTGATGAG TTGTGGTTTT CAACTAGCTA TGAAAGGGCA TGTAGATATT GAAGTGTTGG
    AATCCTCTAC AGTCCTCTAC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss382296461 MGP_WTSI_11_6317432 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs242383069 SNP G G G G G G G G G G G G G G G G G G G A G G G G G G A G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss382296461 MGP_WTSI_11_6317432 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:6367429 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2558 CpG island 2558 641 bp distal
Gm71788 predicted gene, 71788 1716 bp upstream
Ppia peptidylprolyl isomerase A within coordinates
Rr246944 regulatory region 246944 within coordinates
Rr402411 regulatory region 402411 1351 bp downstream
Tssr100250 transcription start site region 100250 1646 bp downstream
Tssr100251 transcription start site region 100251 1616 bp downstream
Tssr100252 transcription start site region 100252 1562 bp downstream
Tssr100253 transcription start site region 100253 1197 bp downstream
Tssr100254 transcription start site region 100254 1112 bp downstream
Tssr100255 transcription start site region 100255 1084 bp downstream
Tssr106715 transcription start site region 106715 1738 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory