rs242388488 SNP Detail

Summary

• ID
  rs242388488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97806631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGGTTGG ACCATTGGAC
  CCGTCTTTTC TCCTGGGTGA AGCGTTTCAG ACAACTTCCC TTAAGTAAGT TTCCTTATAT
  AGAGTGTTTT TGCTCAATGT CTTTTGCCAG CTCTAGACTG TTTTTGGTCT GAGGTGGAAG
  TTCTAATTTG TTTACTGATG TTTTCAGAGC CTTTGCTCCT TGAGGTGTGC TCTCTTCTGA
  Y
  GCCCTCACTC TCTCCTTTCG TTTACCACCA GCACACATTT GTTCTTCTGT CTCCACTCCC
  ATCTCTAGTA GCTAGTTGCT GGGCTTTAGG CTCTCATTAC CTCTTGTTTG GTGGCTTGAG
  CGATGGCTCC AAGAACCTGT CCTGGGAATT CCCCAGGCTT TGGAGAGGGC TGTGTGGCTG
  CCACCTGGAG TGAGCATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369337462	MGP_WTSI_6_97779664	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs242388488					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369337462	MGP_WTSI_6_97779664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97806631 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Tssr57872	transcription start site region 57872	1421 bp downstream
Tssr57873	transcription start site region 57873	1375 bp downstream
Tssr57874	transcription start site region 57874	1358 bp downstream
Tssr57875	transcription start site region 57875	1338 bp downstream
Tssr57876	transcription start site region 57876	1308 bp downstream
Tssr57877	transcription start site region 57877	367 bp downstream
Tssr57878	transcription start site region 57878	354 bp downstream
Tssr57879	transcription start site region 57879	324 bp downstream
Tssr57880	transcription start site region 57880	277 bp downstream
Tssr57881	transcription start site region 57881	94 bp downstream
Tssr57882	transcription start site region 57882	1 bp upstream
Tssr57883	transcription start site region 57883	1277 bp upstream
Tssr57884	transcription start site region 57884	1661 bp upstream