rs242388573 SNP Detail

Summary

• ID
  rs242388573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44886031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTTCTAG CACTGGCACA
  TCATTTAATA TATGTGGCCC TTTTGGCTTA TCTAGCTTGC AACATGACCC AGTTGGGAAT
  CATGTTACTG GGAATGCATT TATTGGTATT GACTTTTATA AAGAGGCTGG TTTTGGTTCT
  AAAGATTCAT GGTTTCTAGT TTGAGGGGAA AAACATAGCT CATGTAAAAG TATATGTGTG
  Y
  CTGAGTGAAT GCATGTTAAT ACGAATAATT TCTCCCTGAA AACTGGGTTT CTGAGATTGG
  GTTGTGATGG TTAGGTTTGT TTTGTGCACA GTATAGCAGC GTCTTGCTTG GCATAGGGAG
  TGTTTTTGTT TTGTGTAGTG GCTTTTTTTT TTTTTTTTTT TTTTTTGTAA GTTTGGGGGG
  AGGGAGTAGA GAGGGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324330604	CHEV_13_44827924	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242388573					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44886031 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5525	CpG island 5525	1129 bp distal
Cpgi5526	CpG island 5526	655 bp proximal
Jarid2	jumonji and AT-rich interaction domain containing 2	within coordinates
Rr369688	regulatory region 369688	1839 bp downstream
Rr403743	regulatory region 403743	1167 bp downstream
Rr403744	regulatory region 403744	245 bp upstream
Rr478587	regulatory region 478587	1274 bp distal
Rr478588	regulatory region 478588	1335 bp distal
Rr478589	regulatory region 478589	1022 bp proximal
Rr478590	regulatory region 478590	1897 bp proximal
Tssr119539	transcription start site region 119539	1957 bp downstream
Tssr119540	transcription start site region 119540	1739 bp downstream
Tssr119541	transcription start site region 119541	1648 bp downstream
Tssr119542	transcription start site region 119542	1519 bp downstream
Tssr119543	transcription start site region 119543	1279 bp downstream
Tssr119544	transcription start site region 119544	1263 bp downstream
Tssr119545	transcription start site region 119545	1214 bp downstream
Tssr119546	transcription start site region 119546	1182 bp downstream
Tssr119547	transcription start site region 119547	972 bp downstream
Tssr119548	transcription start site region 119548	817 bp downstream
Tssr119549	transcription start site region 119549	694 bp downstream
Tssr119550	transcription start site region 119550	1479 bp upstream