rs242391312 SNP Detail

Summary

• ID
  rs242391312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130549988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tactggtta gttcacattg ttgttccacc
  tatagggttg cagacccctt tagctccttg gCACCCCAAC CTTTTAAGCT GCCTCTGGGT
  CTTGACCTCT GTCTCTTTCT CCACAGCCGT GATCGTGGGT GGGGTGGTGG GCGCCCTCTT
  Y
  GCTGCCTTCC TGGTCACGCT GCTCATCTAC CGCATGAAGA AGAAGGACGA AGGCAGCTAC
  ACCTTGGAAG AACCCAAGCA GGCAAGCGTC ACGTACCAGA AACCTGACAA GCAGGAGGAG
  TTCTACGCTT AGCAGAGCCA CAGTGCCTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318863	CHEV_4_130378592	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs242391312					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130549988 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	1717 bp downstream
Sdc3	syndecan 3	within coordinates
Tssr39279	transcription start site region 39279	476 bp downstream
Tssr39280	transcription start site region 39280	9 bp downstream
Tssr39281	transcription start site region 39281	45 bp upstream
Tssr39282	transcription start site region 39282	365 bp upstream
Tssr39283	transcription start site region 39283	435 bp upstream
Tssr39284	transcription start site region 39284	636 bp upstream
Tssr39285	transcription start site region 39285	706 bp upstream
Tssr39286	transcription start site region 39286	773 bp upstream
Tssr39287	transcription start site region 39287	799 bp upstream
Tssr39288	transcription start site region 39288	834 bp upstream
Tssr39289	transcription start site region 39289	963 bp upstream
Tssr39290	transcription start site region 39290	970 bp upstream
Tssr39291	transcription start site region 39291	1118 bp upstream
Tssr39292	transcription start site region 39292	1195 bp upstream